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Improved-high-quality draft genome sequence of Rhodococcus sp. JG-3, a eurypsychrophilic Actinobacteria from Antarctic Dry Valley permafrost
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JGIota: Looking Back at How Cow Rumen Samples Landed on a Syllabus
Back in 2011, JGI-supported researchers published a paper in the journal Science . It detailed how they’d used metagenomics to identify over 27,000 microbial genes. The data from that … California State University campuses for biotechnology education as part of a course-based undergraduate resource …
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Ian Blaby
… design and assembly, strain engineering and bioinformatic tool development/data analysis for synthetic biology and functional genomics. Prior to joining the JGI, he was a group lead at Brookhaven National Laboratory … coupling Cre-lox and CRISPR-Cas9 systems. PloS one. 15: 11. 2020 Blaby & Cheng, Building a custom high-throughput …
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Cataloging the Microbes that Manage the Health of River Systems
United States. They also provided multiple access points to the information. The team harnessed a community-science … turn affecting environmental and human health, energy production and agriculture. Understanding the compositions of … systems, these communities remain understudied. Through the JGI’s Community Science Program, Colorado State University …
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A Step Toward Controlling Soybean Rust
The United States  is the world’s leading soybean producer , and soybeans are used to produce biodiesel. The fungus  Phakopsora pachyrhizi … to counter soybean rust disease. Soybean itself is a  JGI Flagship plant genome , and JGI  published its genome …
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Nikos Kyrpides
Dr. Kyrpides joined the DOE Joint Genome Institute in 2004 to lead the Genome Biology Program and the development of … Nature Biotechnol . 39:499-509. Harrington et al. 2020. A scoutRNA Is Required for Some Type V CRISPR-Cas … Human Intestinal Tract ( MetaHIT ); Community Cyber-infrastructure for Advanced Marine Microbial Ecology Research and …
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Frederik Schulz
Dr. Schulz employs multi-omics (metagenomics, metatranscriptomics, single cell genomics and phylogenomics) and machine … and biogeochemical cycles. He provides his expertise to the JGI user community and supports various user projects in the … Nature Biotechnology 39, 499-509. Schulz et al. (2020) Giant virus diversity and host interactions through …
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2021 Progress Report
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From Stress to Growth: The adaptive mechanisms of algae in changing Arctic waters
P. psychrophila genes drive resilience when salinity fluctuates. The Science The Arctic microalga Plocamiomonas … in its environment, this alga reveals a remarkable ability to adapt to stress and rapid environmental changes. … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Phytozome: Tutorial Workshop from 2022 CROPS Conference @HudsonAlpha
Phytozome workshop held during the June 2022 CROPS Conference … at the HudsonAlpha Institute for Biotechnology. Phytozome is the Plant Comparative Genomics portal of the …
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Building Sphagnum Genomic Resources
… carbon cycling impact.   The Science Enabled by the JGI’s Community Science Program (CSP), researchers are developing a number of resources to build up Sphagnum as a plant model system focused on … reason, the U.S. Department of Energy is overseeing the SPRUCE (Spruce and Peatland Responses Under Changing …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… have leveraged data from the 1000 Fungal Genomes project to form new connections between fungal guilds, genes and … The U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … bases — a terabase — of soil RNA for this project, and produced the reference genomes that allowed for mapping these …
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