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… host microbes impact the regulation of global nutrient cycles. The JGI’s latest strategic plan (download a copy  … The work is supported by NIH Common Fund grant 1U01DE034196-01. The JGI team, including Kyrpides, Camargo, and … CheckV , which assesses the quality and completeness of metagenome-assembled viral genomes ( Nature Biotechnology , …

… article, Micro-Scale Applications head Rex Malmstrom and Metagenome Program head Emiley Eloe-Fadrosh outline more … beyond the tried-and-true method of traditional shotgun metagenomics. One approach uses fluorescence-activated cell … While microbes regulate the planet’s biogeochemical cycles, viruses infecting microbes shape global ecological …

He’s interested in how microbes influence biogeochemical cycles in soils and sediments and plant-microbial … and the JGI-EMSL FICUS programs and brings expertise in metagenomics and novel applications for long-read DNA … Greenham stepped down at the end of her term. In late 2023, the JGI launched a solicitation for nominations for three …

… which is best for the task at hand. “There are at least 30-40 programs and it is not clear which are the best to …

Metagenomic datasets could help map out microbial diversity … the world, playing key roles in regulating global nutrient cycles. The information gained from understanding the … biofuels and bioproducts, and medicine. Wading through 30 years of sequencing data, the team composed of Wu, …

… an organism’s fitness. Moreover, the discovery of more than 30,000 DGRs in this analysis, a 20-fold increase over what … sampled all at once from the same environment, called metagenomes. Why? Simon Roux, who led the research team and is … U.S. Department of Energy under contract no. DE-AC02-05CH11231. This research used resources of the National Energy …

… of how large-scale single cell genomics complements metagenomics studies. The Science Researchers demonstrated the … Impact Though microbes help regulate the planet’s nutrient cycles and are potentially of use in fields ranging from … Facility, is supported under Contract No. DE-AC02-05CH11231. This work was supported in part by a Natural Sciences …

… three  Brachypodium  grasses have small genomes, short life cycles and can be easily transformed, traits that make them … are all available on the JGI’s plant portal  Phytozome v13 . Researchers from the following institutions were also …

… for the next five years. It also includes more than 130 implementation milestones to help track and drive … path, has previously proven successful; in the 2018-2023 five-year strategic plan, the JGI accomplished 90% … the JGI’s ability to predict and respond to biogeochemical cycles, which builds on the DOE’s interest in mitigating …

During the summer of 2021, 13 interns from UC Merced spent eight weeks working virtually … … Evaluation of Binning Tools for Microbial Eukaryotes in Metagenomes … Functional exploration of Phage Impact on … of Rice and Arabidopsis Roots … Making Big Data Metagenomic Clustering Scalable … Cataloging Lineage Specific …

… big the room is.  A new study  published online Oct. 11, 2023 in  Nature highlights the vast array of functional … (IMG/M) database, they successfully crafted the Novel Metagenome Protein Families (NMPF) Catalog.  “We can now … of doing a lot of unique things when it comes to energy cycles — turning biomass into things like ethanol or …