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SPRUCE-ing Up Science
… As a part of his internship, he was regularly tasked by his mentor to present his project work and navigate a … fine tune his approach. “I got a lot of that from Zhong.”   Publication: Carrell AA et al. Habitat-adapted microbial … 2022 Jun;234(6):2111-2125. doi: 10.1111/nph.18072.   Byline: Ashleigh Papp …
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From Sample Shipments to Sequences – A Tour of the JGI’s Sequencing Pipeline
… 35,000 samples — from plants, algae, bacteria, archaea, fungi, viruses — to support scientists around the world. …
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Inspiring STEM Careers Through a Hands-on Everglades Microbiome Study
… Journal publication caps JGI pilot project with fledgling Florida … . “After discussing the project with him, I was inspired by his enthusiasm and drive to give his students this … able to tell the students that the paper was accepted for publication in a reputable scientific journal. It was …
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Open Frameworks Training the Next Generation of Scientists
… generation workforce through funding opportunities managed by the Office of Workforce Development for Teachers and Scientists for both student and faculty researchers. Aligning with this overarching goal, Myco-Ed is a partnership … students developing skills in fungal biology and genomics. Fungi can be better understood through reference genomes, …
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JGI on the 2020 Highly Cited Researchers List
… Researchers at the JGI! They are among those recognized by Clarivate Analytics as “true pioneers in their fields over the last decade, demonstrated by the production of multiple highly-cited papers that rank … genomes of Dothideomycetes, the largest class of fungi, by lifestyles. Additionally, as part of an …
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Triggering Morel Fruiting
… A collaborative team led by Hao Tan from the Sichuan Academy of Agricultural Sciences … aims to provide genomic information for every family of fungi. In the following guest piece, JGI user Dr. Tan … they influence geochemical cycling in forest ecosystems. By deciphering the fruiting-related decomposition mechanisms …
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A Community Resource for Secondary Metabolite Researchers
… core set of "primary metabolites"—chemical compounds shared by most living creatures for energy, growth and … their environment. Many secondary metabolites are produced by groups of genes known as biosynthetic gene clusters … more than 13 million BGCs in the catalog at the time of publication, it is the largest repository of BGC sequence …
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
… little makers rely on to survive. Now, new research enabled by the U.S. Department of Energy (DOE) Joint Genome … .  Finding Methane-Making Microbes with Metagenomics  By leveraging metagenomics to sample the entirety of a … They’ve got different metabolic pathways too — like anaerobic respiration, or fermentation.  “Both these …
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Soil virus offers insight into maintaining microorganisms
… that may promote soil health. The work was enabled in part by a community data portal of the U.S. Department of Energy … 5,000 images of crystalized samples cloned and synthesized by the JGI, scientists have begun the complex process of … — replicating itself.  Chitin is found in the cell walls of fungi and the exoskeleton of insects. It is one of the most …
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Data Ecosystem
… ensure platforms are future-ready for advancements enabled by artificial intelligence and other tools. By bringing users together through our systems, we build …
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Antisense Down-Regulation of 4CL Expression Alters Lignification, Tree Growth, and Saccharification Potential of Field-Grown Poplar    
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Rex Malmstrom
… bacterial cells and amplifying their genetic material, thus bypassing the need to culture these microbes in the lab. … interactions in the hyphosphere of arbuscular mycorrhizal fungi. Microbiome 199 Needham, D.M. et al. 2019. A distinct … Selected Publications …
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