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The Surprising Structure of a Shrub Willow Sex Chromosome
… the sex chromosomes of mammals is, for the first time, seen in a plant. The Science Sex in plants can be befuddling. … strategy we are far more familiar with: differentiating into male and female sexes. For the first time, the sex … shrub willow have been sequenced with sufficient resolution to analyze their structure. Scientists found both a gene …
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JGI & KBase at PAG XXVII
XXVII Conference (PAG) takes place January 12-16, 2019, in San Diego, Calif. Representatives from the DOE Joint … Biology Knowledgebase (KBase) will be at Booth 509. Stop by and chat with representatives from KBase and the JGI … Bob Cottingham host a  workshop on DOE Biological and Environmental Research (BER) Plant Genomic Science on current …
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JGI@25: The Little Alga That Could
… that showcase our collaborations and capabilities to enable great science that will help solve energy and environmental challenges. Chlamydomonas is a single-celled alga … sequences have been cited in almost one-fourth (23.8%) of publications focused on that specific algae. The reference …
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2024 Progress Report
The Integrative Genomics Building (IGB) seen above is home to the DOE Joint Genome Institute (JGI). Researchers from … research community in studies of complex biological and environmental systems. We optimize our service to the community … processed 13,700 metabolomics samples With our users, 247 publications were published   … Our primary objective is to …
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Identifying the Microbial Cleanup Crew at a Superfund Site
Analysis reveals the microbial community involved in a bioremediation effort. The Science In 1999, the Environmental Protection Agency declared the North Railroad … site. The chemical PCE (perchloroethylene) found its way into the groundwater of several communities in New Mexico via …
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JGI@25: The Human Genome Project, or the JGI’s Origin Story
… that showcase our collaborations and capabilities to enable great science that will help solve energy and environmental challenges.   The Human Genome Project began in … with the HudsonAlpha Institute for Biotechnology. Publications Grimwood, J., Gordon, L., Olsen, A. et al. The …
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Extracting the Secrets of Secondary Metabolites
… for growth yet essential for survival, may now be easier to characterize following a proof-of-concept study in which researchers paired … the BGCs that produce them cannot be activated in lab environments. CRAGE made some headway in overcoming this …
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JGI@25: Studying Sorghum’s Survival Skills
… that showcase our collaborations and capabilities to enable great science that will help solve energy and environmental challenges. Sorghum stands out as a candidate … reference genome for Sorghum bicolor . Since then, 2,993 publications, 107 patent applications, and 53 patents have …
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JGI Earth Month: The Unusual Metabolism That Helps Plants Withstand Drought
… and DNA Day on April 25. As both Earth and DNA are close to our JGI hearts, we’re highlighting genomic science … helps plants that have it lose less water in a hot, dry environment. Figuring out how plants evolved to deal with hot … the plants.  ALISON:  That’s what might happen for a stressed typical plant, one that does what’s called C3 …
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
Science Program. Fashioning DNA outside a cell is key to interrogating what genes do, how they work, and applying them to environmental and energy challenges. But not all scientists … more than 10 papers, including two Nature Plants publications, in five years, have come out of the …
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Daniel Udwary
… for JGI’s Secondary Metabolites group. His research interests lie in use and development of bioinformatics tools for elucidation of biosynthetic gene clusters in … (1996) … List available on Google Scholar … Education … Publications …
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Hiroshi Otani
Since joining the DOE Joint Genome Institute in 2016, Dr. … facilitate discovery of new secondary metabolites. Prior to joining the JGI, he studied transcriptional regulation, … in understanding how, when and why microbes decide to produce which metabolites. … BS, Engineering, Tokyo … Mol. Microbiol. 87, 1223-1236. PubMed … Education … Publications …
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