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From Berkeley to Binghamton: Tracking Strawberry Evolution
… In the summer of 2015, Adam Session was a postdoc working at the DOE Joint … and the  oilseed crop false flax – genomes that have been sequenced by the JGI – and the common strawberry, which is … interesting,” Session said.  The Kmer Subgenome Identification method can be  accessed here so that, Session …
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RECAP: Keynote Speakers Talk Innovation at 2022 JGI Annual Meeting
… The JGI was honored to host some of the brightest minds in genetics as part of our  2022 … Jill Banfield approached Doudna with repeated genetic sequences (already known as CRISPR) that came up in her … and his group study one specific alga,  Emiliania huxleyi  (sequenced by the JGI), and the virus that infects it,  …
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10 From JGI on the 2019 Highly Cited Researchers List
… Clarivate Analytics, formerly the IP & Science arm of Thomson Reuters, has released their 2019 list of Highly … Nature Genetics, the work is part of a long-term project to sequence, annotate and analyze the genomes of more than 300 … uncultivated virus genome, including the source, methods of identification of the virus genome, and data quality. Go …
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Complete Genome of Oil-Rich Alga Reveals Ideal Platform for Bioengineering
…   The Science Scientists have fully decoded the genome of an oil-producing green alga, and demonstrated precise … genome assembly, researchers offer a gapless end-to-end sequence of complete chromosomes. Auxenochlorella solves a … discovery that Auxenochlorella thrives despite lacking 33 conserved photosynthesis genes suggests remarkable metabolic …
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Ben Bowen
… BS – University of Arkansas, Fayetteville, Chemical Engineering Ph. D. – … 2024 Berkeley Lab Recognition of Excellence Award 2016 R&D 100 Winner 2014 Berkeley Lab … MIDAS: a database-searching algorithm for metabolite identification in metabolomics. Analytical chemistry, …
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Elucidating gene expression adaptation of phylogenetically divergent coral holobionts under heat stress
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The complete iodine and nitrogen nuclear electric quadrupole coupling tensors for fluoroiodoacetonitrile determined by chirped pulse Fourier transform microwave spectroscopy
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Dealing with Drought: Uncovering Sorghum’s Secrets
… Over 40 percent of the cereal crop’s genes respond to drought stress. The … conventional food crops. For that reason, its genome was sequenced by the JGI in 2009 and it is considered to be … diseases are well known to be partially due to the DNA sequence that makes up an individual’s genome. The genes of …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… A collaborative team led by researchers at the University of Texas (UT) at Austin, the HudsonAlpha Institute for … , which can have pronounced ecological and evolutionary consequences. A previous study conducted by our research team … line of research combined with past insights will allow the identification of potentially novel combinations of genetic …
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Pinning Down a Piece of Photosynthesis
… By studying the structure and function of a cyanobacterial protein, researchers have new insights … of that machine — photosynthesizers’ DNA and RNA. These sequences provide a list of machine parts, and an idea of … the cell, Grosjean used the JGI-developed  guideRNA and Sequence Extraction Tool (gRNA-SeqRET) to produce knock-out …
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Data Ecosystem
… The JGI is leveraging its current partnerships to offer new capabilities and resources to users through a BER … is discoverable and accessible. Linking the resources of powerful institutions like the JGI, KBase, NCBI, NMDC, … access to diverse datasets that deepen our understanding of how organisms interact with each other and with their …
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Network Modeling of Complex Data Sets
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