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Webinar: SIP technologies at EMSL and JGI
… Joint Genome Institute (JGI) provide access to a variety of tools that leverage stable isotopes to measure carbon and … at JGI and EMSL such as DNA-SIP, Protein SIP, Flux Balance analysis with metabolites, Isotope Ratio Mass Spectrometry, … from the Webinar: 1. Q(uestion): How much DNA is required for the JGI SIP metagenomics pipeline? A(nswer):  The more …
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From Stress to Growth: The adaptive mechanisms of algae in changing Arctic waters
… P. psychrophila genes drive resilience when salinity fluctuates. The Science The Arctic microalga Plocamiomonas … manage the growth, yield and climate resilience of algae — for potential use as biomass or in biomass conversion to … Berkeley National Laboratory (Berkeley Lab). In their analysis, they found the salinity changes led the algae to …
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PhycoCosm Tutorial
… interactive collection of sequenced algal genomes, omics data and comparative analysis tools developed by the Joint Genome Institute (JGI), a US …
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Learning to Look
… answer the question, “Where’s Waldo?” readers need to look for a number of distinguishing features. Several characters … of phage-bacterial coevolution and are also useful tools in CRISPR-Cas applications, but we are limited in our … can help their host survive. “It is an exciting time to be studying filamentous phages!” said Krupovic. “We can now …
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A single-cell genome perspective on studying intracellular associations in unicellular eukaryotes
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Does time matter? Intraspecific diversity of ribosomal RNA genes in lineages of the allopolyploid model grass Brachypodium hybridum with different evolutionary ages
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Protocol for single-cell isolation and genome amplification of environmental microbial eukaryotes for genomic analysis
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Building Sphagnum Genomic Resources
… Sphagnome data would enable researchers’ insights on their potential … model system focused on carbon cycling studies, rather than for food or fuel applications. The Impact Sphagnum’s impact … of the Office of Biological and Environmental Research, the Joint Genome Institute supported by the Biological Systems …
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Nick Everson
… rejoined the JGI in 2020  and leads all aspects of JGI Operations which include the Safety, Finance, Human Resources, … after serving as the Chief Operating Officer of the DOE Joint Bioenergy Institute and the Operations Deputy for LBNL’s Biological Systems & Engineering Division. Prior …
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JGI@25: Using Team Science to Build Communities Around Data
… 2022, we have revisited a number of notable achievements that showcase our collaborations and capabilities to enable … a 2012 Community Science Program proposal. Joseph Spatafora of Oregon State University led the effort to sequence … genomes that are both large and complex. The first publication of a genome generated by the OGG initiative — …
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Enlarging Windows into Understanding Gene Functions
… array of combinations, are unremarkable, save perhaps for the absence of all the other letters of the alphabet. … Berkeley National Laboratory (Berkeley Lab). And one of the tools that researchers can apply to study the transcription … be used by itself, it can also serve as a stepping stone to studying many genomes simultaneously through multiDAP, which …
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Identifying the Microbial Cleanup Crew at a Superfund Site
… Analysis reveals the microbial community involved in a bioremediation effort. The Science In 1999, the Environmental Protection … to access the JGI’s  Integrated Microbial Genomes and Microbiomes (IMG/M) system. For example, the team has since … Partial support was provided by the National Center for Research Resources (NCRR) (5P20RR016480-12) and the …
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