Results

Transcriptomic data sets for Novosphingobium aromaticivorans DSM12444 and a ΔSARO_RS14285 mutant grown in the presence of glucose and either protocatechuic, vanillic, syringic, or 4-coumaric acid
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A Sorghum Pangenome Opens More Doors to Discovery
… sorghum varieties, a resource for breeders and researchers to harness the traits that let this biomass powerhouse … and the phenotypic diversity across this plant in one accessible resource,” said John Lovell, a Research Faculty … Development (USAID) also supported the work.   Publication:  Morris, G.P., Harder, A.M., Healey, A.L.  et …
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Microbial Genomics & Metagenomics (MGM) Workshop
… mgm.jgi.doe.gov   This highly hands-on workshop is designed to familiarize users with the Integrated Microbial Genomes & Microbiomes (IMG/M) data and workflows for computational analysis and … sequence data. IMG/M is a web-based platform that provides access to the wealth of public microbiome sequence data and …
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DOE JGI Interns Share Their Summer Experiences
… Many of them spent the summer crunching genomic data at a computer; a few had the opportunity to spend time out in the field, work at the lab bench, and … were: Rida Ali, who worked with T.B.K. Reddy on the Genomes OnLine Database; Sarah Fruchart , who worked with Matt Blow; …
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New Vision, New Mission, New Plan: The JGI’s Next Five Years
… JGI will advance the bioeconomy, leveraging partnerships to advance foundational science, creating opportunities for … its newest 5-Year Strategic Plan: Innovating Genomics to Serve the Changing Planet (download a copy at … a vast range of organisms and ecosystems. These kinds of data could open opportunities along multiple avenues, …
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The Sorghum bicolor reference genome: improved assembly, gene annotations, a transcriptome atlas, and signatures of genome organization
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Exploring microbial functional biodiversity at the protein family level—From metagenomic sequence reads to annotated protein clusters
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Improved Gene Annotation of the Fungal Wheat Pathogen Zymoseptoria tritici Based on Combined Iso-Seq and RNA-Seq Evidence.
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A One-Stop Shop for Analyzing Algal Genomes
… The PhycoCosm data portal allows anyone to freely investigate the genes of … flow through and transform in algae. PhycoCosm joins other online data portals and tools created by JGI researchers, …
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Natural Prodcast Episode 1: The Primer, Part 1
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s … of secondary metabolism.  DAN: Hey there, and welcome to the first episode of Natural Prodcast. First, maybe, a … so now here at the JGI, I work with all of the sequencing data that the JGI produces to try to find and identify …
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Introducing New Members of the JGI User Executive Committee
… The JGI welcomes three new members to their User Executive Committee (UEC) – Jack Gilbert, … She aims to help overcome common user bottlenecks in access, analysis and sharing of JGI-generated data. She is also interested in reaching and engaging with …
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Inaugural Critical Minerals & Materials Joint Research Portfolio Announced
… Pictured from left: [Top row]: Romy Chakraborty, Dawn Chiniquy, Anne Glaesener, … researchers leading approved proposals with free access to their resources and capabilities to advance their … advanced genomic capabilities and access to large-scale data resources. Supported by the Basic Energy Sciences (BES) …
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