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How to Target a Microbial Needle within a Community Haystack
… microbes from complex environmental samples. The Science A team led by researchers at the Max Planck Institute (MPI) … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … Development of this protocol was enabled by the JGI’s  Emerging Technologies Opportunity Program . The ETOP …
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Tina Clarke
… (JBEI) and in 2017 joined the Joint Genome Institute (JGI). Tina serves in an HR advisory role to Division/Area … Analyst, May 2015 –  present Joint Genome Institute (JGI) HR Partner, June 2017 – present Berkeley National …
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Fungal Friends or Foes in Plant Roots
… these other plant-fungal relationships, an international team led by graduate student Fantin Mesny in Stéphane … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … Communications paper . The work was partly enabled by a JGI Community Science Program (CSP) proposal led by INRAE’s …
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Honey Bee Gut Microbiota Divvy Up Dinner
… for what biochemical processes? Now, an international team of researchers has identified the major metabolic roles … the  Proceedings of the National Academy of Sciences . The team focused on the dominant bacterial clades shared between … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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Cold adaptive traits revealed by comparative genomic analysis of the eurypsychrophile Rhodococcus sp. JG3 isolated from high elevation McMurdo Dry Valley permafrost, Antarctica
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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
… organism processes both carbon and nitrogen. This research team combined computational and experimental approaches to … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … for computational analysis of the AT enzyme family, the JGI provided DNA synthesis capabilities to enable functional …
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Finding the Fermenters
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … metabolism from the literature. They then used the JGI’s GOLD and IMG data portals to get information about the … To demonstrate the potential utility of the browser, the team used  Fermentation Explorer ( GitHub ) with a series of …
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A Collaboration to Improve Plant Genome Annotations Across Species
… improvement for plants. As part of that partnership, the JGI and HudsonAlpha researchers led a team that  recently published work on the JGI Plant Gene Atlas in  Nucleic Acids Research . The …
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Olpidium, The Key to the Origin of Terrestrial Fungi
… fungi of Chytridiomycota (the “chytrids”).  A collaborative team led by Joey Spatafora at Oregon State University, Jason … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, found that the … aquatic to terrestrial habitats. The work is part of the JGI’s 1000 Fungal Genomes Project, which aims to provide …
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Marine Microbe Contains Multitudes
… structure of SAR324 cells and their gene expression, the team then sequenced community genomes and expressed gene … at the U.S. Department of Energy Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … Berkeley National Laboratory (Berkeley Lab), through the JGI Community Science Program . The metagenomes were also …
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The Expanding Universe of Methane Metabolisms in Archaea
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, for publicly … of Life Symposium in April, which immediately precedes the JGI’s 14th Annual Genomics of Energy & Environment Meeting. … sediments and based on metabolic reconstructions, the team has two main hypotheses: the novel korarchaeon could …
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … off.” Yet, after extensive study, Hatzenpicher and his team were able to definitively prove two other archaea … of methanogenesis, with metagenomic support from the JGI. First they were able to identify the potential for …
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