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Finding the Fermenters
… Harnessing BER-funded data resources, researchers built an interactive and comprehensive database … prokaryotes. The Science Most organisms use oxygen to convert food into energy. However, in environments with … National Laboratory (Berkeley Lab), and the DOE Systems Biology Knowledgebase (KBase). They also built an …
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Webinar: MycoCosm Tutorial
… about JGI’s  MycoCosm data portal , an interactive collection of sequenced fungal genomes, omics data and comparative … For model fungi, not sequenced by JGI and adopted by large research community we  are trying to link to the community … (2018) Fungal Genome Annotation. In Methods in molecular biology 1775:171-184. Furthermore, Annotration SOP with …
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An Enzyme System to Help Catalyze Bioproduction of Plastic
… By characterizing the structure and function of a methylthio-alkane reductase system, researchers could open avenues for using bacteria to produce … industry,” said Justin North, assistant professor of microbiology at Ohio State University and senior author of this …
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Rex Malmstrom
… is a Staff Scientist and leader of the Microscale Applications group. Before joining the JGI in 2010, he made the first ever measurements of in situ growth rates and carbon consumption of SAR11 bacteria, the most abundant … liquid transfer and microfluidics, to minimize molecular biology reactions, increase throughput, and enable …
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Ben Bowen
… spectrometry-centered projects, Dr. Bowen’s work focuses on developing high-performance computing workflows and … for advanced analysis, modeling, and data integration. Dr. Bowen’s expertise in spectral alignment, molecular … supporting the DOE’s Biological and Environmental Research user community in their bioenergy and environmental …
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A One-Stop Shop for Analyzing Algal Genomes
… The PhycoCosm data portal allows anyone to freely investigate the genes of more than 100 algae. … complex and difficult to sequence and understand. A team of researchers led by Algal Genomics Program lead Igor … reinforces the JGI’s new strategic focus on exploring algal biology, diversity, and ecology. PhycoCosm has many …
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EcoFAB 2025: Advancing Mechanistic Microbial Science Using Fabricated Ecosystems
… Register here Book your stay at the conference venue This inaugural event will bring together researchers across major ecosystems and disciplines who are … and applying laboratory ecosystems to help transition microbiome science from largely observational to …
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Products
… in: DNA and RNA sequencing, Sample and library preparation, Biodesign and pathway engineering Mass spectrometry … a table of standard product offerings, including a description of the product and deliverables as well as target cycle times from sample receipt to completion of standard analysis.  Raw data is provided for all …
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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… over the last  25-plus years since the JGI’s inception, making it possible for researchers to get a close look at more ecosystems and … than ever before. In 2006, the JGI produced 33 billion base pairs of sequence; by 2023, that number was almost … of Science User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in …
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Fishing for Novel Cellulose Degraders
… single-cell genomic approach to bioprospecting. The Science One of the most vital pieces of equipment for fly fishing is … specific catches. A similar technique has been developed by researchers led by Tanja Woyke at the U.S. Department of … of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab). Using a single-cell screen, …
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Fungus Fuels Tree Growth
… Researchers start pinning down how a fungal symbiont spurs … feedstock.     The Science The fungus  Mortierella elongata enjoys a dual lifestyle; it can thrive in the soil as … the Plant-Microbe Interfaces program at the Oak Ridge National Laboratory (ORNL) sponsored by the Office of Biological …
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Engagement Webinar: Accessing NEON’s Environmental Sample Archives, Applying JGI & EMSL Omics Tools
… The  National Ecological Observatory Network (NEON) is a network of field research sites designed to collect long-term open access … Ridge National Laboratory  Center for Structural Molecular Biology .  Watch this webinar hosted by EMSL to learn more … of Science User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in …
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