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Accelerating Metagenomics Discoveries with Deep Learning
… samples rather than single cells or isolated strains, is easy to generate, but difficult to assemble and interpret. The workshop aimed to showcase how … and, independently, Ying Zhang of the University of Rhode Island), and to bin metagenomic contigs (inferred …
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Jane Grimwood Named HudsonAlpha Genomics Chair
… Congratulations to Jane Grimwood, who has been appointed the Loretta Purdy Spencer Chair in … Cited Researchers list assembly by Clarivate Analytics. In 2020, she was named a Yellowhammer Woman of Impact.     … through more targeted genome editing techniques. A 2020 Nature Biotechnology paper on the release of the high …
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JGI Announces FY26 Large Scale Portfolio for Our Community Science Program
… [Pictured from left to right are: [Above] Sara Branco, Asdrubal Burgos, Posy Busby, Hao Chen, Jay Chen, Maureen … of sequence. “We are thrilled to support this year’s CSP awardees as they embark on ambitious projects that span … research community. See below for the full list of 2026 CSP Large Scale Call recipients.    …
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Fungal Friends or Foes in Plant Roots
… Uncovering associations between plant roots and fungi that can help or … Arabidopsis thaliana roots with genomes from other plant-associated fungi. Their analysis identified fungal gene … work was partly enabled by a JGI Community Science Program (CSP) proposal led by INRAE’s Francis Martin that contributed …
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Triggering Morel Fruiting
… culturally, and ecologically important fungi, widely prized as a culinary delicacy, but also because they influence … litter and to incorporate the assimilated carbon into the soil, reducing the amount of CO2 emissions from decaying … while increasing the organic matter and fertility of the soil. Morels (Morchella spp.) were previously considered …
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Six join FICUS program in 2026
… (EMSL) and other national user facilities. Focus areas for these projects include biofuels, biomaterials and … is designed to encourage and enable researchers to more easily integrate the expertise and capabilities of multiple … Science Foundation (NSF). In recognition of the increasingly collaborative and multidisciplinary nature of DOE …
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Long-term excess nitrogen fertilizer increases sensitivity of soil microbial community to seasonal change revealed by ecological network and metagenome analyses
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16S rRNA Gene Amplicon Sequencing Data from Flooded Rice Paddy Mesocosms Treated with Different Silicon-Rich Soil Amendments
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H2-saturation of high affinity H2-oxidizing bacteria alters the ecological niche of soil microorganisms unevenly among taxonomic groups
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Meta-omics survey of [NiFe]-hydrogenase genes fails to capture drastic variations in H2-oxidation activity measured in three soils exposed to H2
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JGI announces 2024 New Investigator portfolio
… a range of projects spanning the resilience of desert grasslands to the metabolic savviness of microbial ecosystems …
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JGI Earth Month: Kjiersten Fagnan Reflects on Shelter-in-Place Effects
… In   April 2020, we mark both the 50th celebration of Earth Day on April 22, and DNA Day on April 25.  On March 17, 2020, a shelter-in-place order for all residents took effect … in one of those counties. The shelter-in-place order has since been extended statewide. In this brief captioned …
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