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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… This webinar focused on how the JGI employs single-molecule, long-read DNA sequences to aid with genome assembly and transcriptome analysis of … the 1Tb cap. PacBio metagenomes are currently sequenced without pooling, which yields ~ 180 Gb of data per library. …
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Gene Expression: From On-Off Switch to Dial
… systems, expanding the technologies available for other JGI users outside the realm of bioenergy optimization. … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … results show that this singular library synthesized by JGI was versatile enough for use in multiple applications. …
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Accelerating Metagenomics Discoveries with Deep Learning
… Lab) and other institutions shared their works-in-progress with 86 participants in an online workshop to harness deep … the US Department of Energy (DOE) Joint Genome Institute (JGI), presented on generating vector representations of … to become much simpler; instead of aligning sequences with popular, but computationally costly approaches such as …
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The More the Merrier: Making the Case for Plant Pan-genomes
… plants abide by the concept, “the more the merrier,” with respect to their genomes. In their base state, they are diploids with two genome copies, one from each parent. Having three … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Help from Citrus’ Bitter, Hardier Cousin
… Citrus , appeals in other ways. It better tolerates cold, withstands pests, and, especially tantalizing, resists a … the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … UF/IFAS professor of citrus breeding genetics and longtime JGI collaborator, are senior authors of the  recent study …
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Identifying the Microbial Cleanup Crew at a Superfund Site
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … involved in successfully biodegrading PCE.  Through the JGI’s  Community Science Program , they were able to analyze … data. (Data from the project are available on the  JGI Genome Portal .) The team has also been able to discover …
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Olpidium, The Key to the Origin of Terrestrial Fungi
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, found that the … Olpidium attracted the attention of many mycologists with the two publications of the kingdom-wide, multi-gene … In both studies, however, Olpidium was unexpectedly grouped with non-flagellated terrestrial fungi, but not with the …
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Supporting Global Research into Actinomycetes
… is more than just a funny word. The 500 species described within the group are responsible for roughly two-thirds of … agents and to promote plant growth. It is the largest genus within Actinobacteria and therefore a cornerstone of … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, as well as a …
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Charting Progress toward Professional Goals
… on meaningful lessons from their summer experiences at the JGI Berkeley Lab offers a variety of programs to help … Students can apply for internships and work onsite with an experienced researcher who serves as their mentor. … experiences.  Genomic data scientist Deanna Beatty sat down with interns hosted at the JGI through three different …
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Green Algae Reveal One mRNA Encodes Many Proteins
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … (FICUS) collaborative science initiative between the JGI and EMSL.  … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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The Expanding Universe of Methane Metabolisms in Archaea
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, for publicly … that methanogenesis is one of the oldest metabolisms, with the first traces possibly at ~3.5 Gy (billion years),” … the other five only distantly related to known methanogens. With the help of this information, the researchers found …
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Giant Bacteria Found in Guadeloupe Mangroves Challenge Traditional Concepts
… in the tube look like a scoop of stormwater, complete with leaves, debris, and even lighter threads in the mix. … size is notable because bacteria aren’t usually visible without the assistance of microscope. “It’s 5,000 times … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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