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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
… Congratulations to US Department of Energy (DOE) Joint Genome Institute (JGI) staff scientist Simon Roux , who … and plasmid workflows for the National Microbiome Data Collaborative.  This award recognizes distinguished research … (VEGA) Symposium , which will take place later this year in Berkeley, Calif. Convening the “viral ecogenomics” …
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Better Genome Editing for Bioenergy
… part of CRISPR-Cas9 technology to enable improvements in microbial oil production. The Science CRISPR-Cas9 is a powerful, high-throughput gene-editing tool that can help scientists engineer organisms for bioenergy applications. Cas9 needs guide … This work was supported by DOE Joint Genome Institute grant  CSP-503076 (IW, HA, and MB) and …
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DAP-seq Drives Robust Mapping of Gene Regulation
… view of plant evolution and adaptation.    Understanding how genes are regulated is like deciphering the complex … a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory. “These proteins’ binding preferences are very, … a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory, is committed to advancing …
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Adopt-A-Genome
… In this episode, undergraduates adopt genomes that the JGI sequenced, but never published in the literature. These students analyze the genomes, write … and publish first-author papers, making the data available for future research. Hear from Rekha Seshadri (JGI) …
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JGI@25: A Single Cell, Myriad Microbial Discoveries
… In honor of the JGI's 25th anniversary in 2022, we have … a number of notable achievements that showcase our collaborations and capabilities to enable great science that … challenges. In 2009, researchers at the JGI and the Bigelow Laboratory for Ocean Sciences described a novel technique to …
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Introducing New Members of the JGI User Executive Committee
… “you-wren”) of the University of Arizona! They join nine other JGI users already serving on the UEC – go here to … analyzed use-restricted data without contacting the lab that generated that data,” he said in his candidate …
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iPHoP: A Matchmaker for Phages and their Hosts
…   To understand virus-host dynamics, computation helps fill in what cultivation can’t. The Science At first, viruses are … new program called iPHoP (pronounced “eye-pop”,  freely available online ). It combines and evaluates multiple … a DOE Office of Science User Facility at Lawrence Berkeley National Laboratory, aimed to streamline a process …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
… In honor of the JGI's 25th anniversary in 2022, we have … a number of notable achievements that showcase our collaborations and capabilities to enable great science that … of the microbes found in any environment can be grown in a laboratory — and rumen microbes are no exception. Back in …
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Nikos Kyrpides
… Dr. Kyrpides joined the DOE Joint Genome Institute in 2004 to lead the Genome Biology … of Illinois at Urbana-Champaign and at Argonne National Laboratory. Dr. Kyrpides’ research focus on Microbiome … BA in Biology, Aristotle University of Thessaloniki, Greece PhD …
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New Research Sheds Light on Diversity in the Deep Sea
… Microbial communities living near hydrothermal deep-sea vents hold vast potential for … conditions — like temperature, pH levels or the availability of certain nutrients — influence the makeup and … a DOE Office of Science User Facility at Lawrence Berkeley National Laboratory, contributed metagenomic …
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2025 NeLLi Symposium
… fees: Regular attendees  (LBNL and external): $400  Industry: $450  Students and postdocs (including LBNL students and postdocs): $250      Hosted by the DOE … will be held on November 4 at the National Atomic Testing Museum at the Desert Research Institute. Metagenomic and …
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New Research Finds Flagella in the Terrestrial Roots of Marine Bacteria
… s ditched their flagella and other traits when migrating back to the ocean. The Science Scientists have … a DOE Office of Science User Facility at Lawrence Berkeley National Laboratory, has unveiled these motility tools in hot spring  … Work carried out at Lawrence Livermore National Laboratory (LLNL) was done under Contract DE-AC52-07NA2734. …
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