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Silver age of GOLD introduces new features
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … in centigrade, and more.  The four level project organization system implemented in GOLD consist of: Studies, … scientific discoveries. GOLD’s  public Application Programming Interface allows users to access curated …
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Plant Microbial Interactions Group
… detrimental microbial pathogens, and associated viruses that all contribute to a dynamic ecosystem. We are … influence, and are influenced by microbial partners. We use a variety of genomics-powered tools to study this … and complex ecosystem that includes bacteria, fungi, viruses. Resident viruses can be found in a myriad of bacterial …
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Ancient Algae Reveal Secrets of Plant Evolution
… to terrestrial life paves the way for innovations in sustainable agriculture and clean energy. These evolutionary … in marginal lands and with minimal resources. Enabling the use of non-arable land for biomass production — that can be … a strong bioeconomy. Summary Through the Community Science Program of the U.S. Department of Energy (DOE) Joint Genome …
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Sequence to Function: Applications and Analysis for the Future (SFA²F)
… established and emerging scientists from academia, industry, and government organizations for three days of scientific presentation, … center talk and a tech talk. Stop by the JGI booth to learn about our user programs and how we can help advance your …
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Four Researchers Join JGI User Executive Committee
… Four researchers have been elected to the User Executive Committee of the Joint Genome Institute, a … Life symposia. Bik is a recipient of the Community Science Program (CSP) New Investigator call. Through membership in … UEC also contributes to proposal review procedures and the organization of the JGI Annual Meeting. Any investigator who …
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Igor Grigoriev
… training at UC Berkeley and work in the pharmaceutical industry. He holds joint appointments as Fungal and Algal Program Head at the JGI, a Senior Scientist at Lawrence … geomics and PhycoCosm portal. Dr. Grigoriev engaged thousands of researchers in genome projects and organized …
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DOE JGI Interns Share Their Summer Experiences
… part of the DOE JGI’s efforts to promote diversity and inclusion in the sciences, among the interns were two … groups, respectively. Each of the interns spoke briefly about their time at the JGI at … Merced Genomics Distinguished Graduate Internship Program, Susannah Tringe and Axel Visel hosted Imelda …
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Cultivating Symbiotic Antarctic Microbes
… ecological consequences of microbe-microbe interactions. Using metagenomes recovered directly from environmental … researchers have been able to gain further insights about how microbes have adapted to thrive in polar … Aenigmarchaeota, Nanoarchaeota, and Nanohaloarchaea) superphylum of extremophilic archaea first outlined by JGI …
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JGIota: The Algae Nicknamed ‘Chlamy’
… This shorter episode is about a tiny, single-celled alga – Chlamydomonas reinhardtii … managed to sequence its genome, and what it has to teach us about other organisms – like plants. [ Editor’s Note: …
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JGI@25: Using Team Science to Build Communities Around Data
… The 1KFG project represents affiliations at over 180 organizations in 29 U.S. states and 35 countries. (Graphic: … Genomes (1KFG) Project through a 2012 Community Science Program proposal. Joseph Spatafora of Oregon State … Spatafora and Jason Stajich from UC Riverside would focus on broad sampling of early diverging fungi, and Francis …
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A Model System for Perennial Grasses
… model to study drought tolerance in perennial grasses using Panicum hallii (Hall’s panicgrass), by generating two … The U.S. Department of Energy (DOE) supports research programs for developing methods for converting plant biomass into sustainable fuels for cars and jets. By studying a close …
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Computationally Classifying Fungal Lifestyles
… and feedstocks for biomass and biofuel production. Learning about the ecology and evolution of  Dothideomycetes could … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … work was enabled in part through  JGI’s  Community Science Program (CSP) , as several approved proposals have …
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