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The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata
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The Genomes On Line Database (GOLD) in 2007: status of genomic and metagenomic projects and their associated metadata
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Trent Northen
… leadership roles within large DOE-funded research programs using mass spectrometry for energy and environmental … to provide advanced metabolomic methods available to JGI users.  Dr. Northen’s research is focused on using metabolomics to link genomes with environments to understand how webs of …
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Statement on the Use of Genomics Data
… Institute (JGI) is committed to advancing the field of genomics through open access to resources and promoting data … data policies. Since completion of the HGP, the JGI has sustained its commitment to uploading sequence data generated on behalf of its user community to NCBI as well as to the  data portals that …
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Annual Genomics of Energy & Environment Meeting
… Thank you for joining us at the 2024 DOE Joint Genome Institute (JGI) Annual Genomics of Energy & Environment Meeting! The JGI convenes … this annual gathering of leaders from diverse disciplines to highlight how they are addressing the world’s most …
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2025 Progress Report
… how their laboratory and data science efforts support users, advance foundational science and enable biotechnology … Mi Yan, Deanna Beatty)    Vision  Lead AI-driven genomic innovation to advance biotechnology. Mission  As a U.S. Department of Energy Office of Science user facility supported by the Biological and Environmental …
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Better Crops With a Pointillist Approach to Plant Genomics
… In this episode, we peer into plant cells. Researchers are using measurements from single cells to understand which … and more. And eventually, their findings could help us grow better crops, with less impact on our planet. …
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Better Genome Editing for Bioenergy
… of the genes in a lipid-prolific yeast. The Impact The team used this set of guide RNAs on  Yarrowia lipolytica to … organisms. Summary According to legend, Abraham Lincoln once said, “Give me six hours to chop down a tree … can make up more than 90 percent of the microbe’s dry weight. In order to better harness these gobs of energy, a …
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JGI@25: From Life at the Extremes to Editing Genomes
… led by Nikos Kyrpides , mining the Integrated Microbial Genomics & Microbiomes (IMG/M) system’s immense collection … ecosystems around the world, conducting iterative searches using statistical analyses to continuously refine and … and Management.” So begins a passage from Doudna’s book about her meeting with Banfield. (Banfield’s recounting of …
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Giant Bacteria Found in Guadeloupe Mangroves Challenge Traditional Concepts
… be single bacterial cells, visible to the naked eye. The unusual size is notable because bacteria aren’t usually … Université des Antilles, described the morphological and genomic features of this giant filamentous bacterium, along … explained. “This kind of discovery opens new questions about bacterial morphotypes that have never been studied …
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A Cost-Efficient Way to Convert Yeast into a Cell Factory for Hydroxyapatite
… a high-value biomaterial with a wide range of industrial applications. The team was led by researchers at two … highlights an  ongoing partnership that combines the JGI’s genomic capabilities with the Foundry’s nanoscale materials … can synthesize other bio-based materials. For information about licensing the patented osteoyeast for hydroxyapatite …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… a computational pipeline to sift and characterize RNA virus sequences.  A zoo once offered a coloring book featuring … vastly outnumber the microbes. Advances in sequencing technologies and computational tools have uncovered a … Finding the RNA virus snowflakes in the snowstorm of genomic data involved developing special computational …
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