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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
… ultimate achievement. To get to this point requires rigorous research, written skill, above all else, determination. … over a billion years old. It’s an insanely diverse group of organisms that include some delicious additions to a savory … Grigoriev at the JGI strongly influenced her perspective about what it means to be a scientist. “To see how team …
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You Can Move, But You Can’t Hide
… identify mobile genetic elements like plasmids and viruses. The Science Mobile genetic elements (MGEs) are genetic … must examine the interactions that happen between tiny organisms (microbes) located in soils and water. MGEs like … biogeochemical cycles around them. By understanding more about the genomics of MGEs and their evolution at the …
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Taking Stock of the Known and Unknown Microbial Space
… help map out microbial diversity hotspots Over the past few decades, advancements in sequencing technologies have led to … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … assesses what fraction of the microbial diversity we know about, and proposes a path forward to curate and cultivate …
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Kjiersten Fagnan
… Research Division. As a postdoc, her research focused on stable and accurate computational methods for … Dr. Fagnan became the JGI-NERSC Engagement Lead with a focus on adapting JGI workloads to run on supercomputing … and user-centered design efforts. Dr. Fagnan was on the organizing committees for the ASCR Integrated Research …
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Characterizing Communities: JGI Announces Latest CSP Portfolio
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility, 24 large-scale proposals have been accepted … ecologically relevant species. Another focus area was inter-organismal interactions, and two fungal proposals focus on … the University of Minnesota is interested in learning more about the fungal endophytes of soybean and how they deter …
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A Sorghum Pangenome Opens More Doors to Discovery
… Leveraging decades of technological development, dozens of reference genomes and thousands of resequenced sorghum varieties, a resource for … how we think of things that we thought we knew everything about,” said Lovell.  In future work, a pangenome offers … of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence Berkeley National …
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From Textbook to Real World Applications
… La Salle High School expressed an interest in learning more about the principles of synthetic biology, Robert Evans and …
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Ronald de Vries
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Biotech Partners Summer Intern Co-Authors NAR Paper
… Kaushal Sharma, one of five Antioch High School rising juniors … Database (GOLD) administered by the DOE JGI. T.B.K Reddy, Kaushal‘s mentor, described his student’s contributions as … tasks we assigned.”       Click here to watch a video about the Biotech Partner summer interns at the JGI. What …
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Building Sphagnum Genomic Resources
… resources to build up Sphagnum as a plant model system focused on carbon cycling studies, rather than for food or fuel … other single plant genus. Peatlands accumulate partially decomposed matter, and researchers estimate that they hold about 25 percent of the world’s soil carbon. In high …
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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
… As warm-adapted microbes edge polewards, they’d oust resident tiny algae. The cold polar oceans give rise to … base of marine food webs are microscopic photosynthesizing organisms called phytoplankton (from the Greek phyto for … other words, some like it hot; some do not. “We can think about the ocean, naively, as a sort of homogeneous medium. …
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The More the Merrier: Making the Case for Plant Pan-genomes
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … and in the laboratory. “We are fortunate because the progenitor species of  Brachypodium hybridum are … de Zaragoza, one of the paper’s senior authors. “It offers us the possibility to explore genomically the whole complex …
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