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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
… gap, by tracing the evolution of a specific enzyme family called aminotransferases (ATs). These enzymes play a crucial … enzyme family evolved across 90 species. “One unique thing about this work was our focus on all the kingdoms, including animals, plants, bacteria, …
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Massie S. Ballon
… Massie S. Ballon is the Communications and Outreach Manager at the JGI. Through multi-platform stories and outreach efforts, … as help cultivate the next generation of genomic research users, partners, and collaborators.  Ms. Ballon is a … to see the coverage of JGI-enabled science highlighting user research, newly accepted proposals, and outreach …
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You Can Move, But You Can’t Hide
… identify mobile genetic elements like plasmids and viruses. The Science Mobile genetic elements (MGEs) are genetic … of MGEs are viruses and plasmids. They can be found in virtually all of Earth’s ecosystems. A software tool  recently … biogeochemical cycles around them. By understanding more about the genomics of MGEs and their evolution at the …
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Applying Viral Genomics Expertise to Understanding the Human Virome
… and around Earth outnumber the stars in the Milky Way, viruses outnumber the microbes by at least another order of … ," is among the five focused on tool development. Specifically, the goal of this work is to develop tools, curated … center for the HVP ," is related to developing an organizational hub for the program, to organize and manage …
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Tracking the Origins of Methane-Producing Microbes
… the total global methane production. They are thought to use billions of tons of the carbon dioxide trapped in … to have a substantial influence on the global carbon cycle. All methanogenic archaea use one of three pathways for … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility, report the …
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Genome organization of the vg1 and nodal3 gene clusters in the allotetraploid frog Xenopus laevis
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Leptothrix ochracea genomes reveal potential for mixotrophic growth on Fe(II) and organic carbon
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Conserved unique peptide patterns (CUPP) online platform 2.0: implementation of +1000 JGI fungal genomes.
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JGI Plant Gene Atlas: an updateable transcriptome resource to improve functional gene descriptions across the plant kingdom
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Fungal Friends or Foes in Plant Roots
… may have unknown roles. Some plants and fungi have mutually beneficial (e.g., mycorrhizal) relationships, but not … fungi can form such symbiotic partnerships. To learn more about these other plant-fungal relationships, an … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… a computational pipeline to sift and characterize RNA virus sequences.  A zoo once offered a coloring book featuring … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … Lab) describe a computational pipeline that can specifically scan for those snowflakes, or RNA virus sequences. …
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Game On: High School Students Drive Everglades Metagenomics Study
… Management Group, attended a conference in Florida to discuss a JGI pilot project involving soil sampling in the … the next generation of scientists. She shares her thoughts about the experience below. In the summer of 2018, Jonathan … JGI Director, Nigel Mouncey. Jonathan credits his intrinsically motivated students with fully defining the project, but …
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