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Model Fern Reveals Insight into DNA Thievery in Ferns
… with C. richardii The Science Fern genomes are huge, and incredibly complex — making it difficult to grasp a deeper … a genome duplication event that occured some 60 million years ago. Massive gene loss, rampant gene duplications, and … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… with the prospect of meta-analyses boosted by AI and Machine Learning — JGI researchers and collaborators work to create FAIR … to analyze samples from one experiment. Starting a  few years ago, researchers can request quantitative SIP analysis …
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Sequencing Technologies
The Sequencing Technologies Group applies cutting edge molecular capabilities and state-of-the-art … sequencing to enable biological discovery by the JGI and external DOE users. Adopting the latest  sequencing …
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Cultivating Symbiotic Antarctic Microbes
… cultures reveal they are symbionts and not free-living organisms. The Science Researchers employed multiple … microbiology and ‘omics techniques to experimentally determine that Nanohaloarchaeota are symbionts, rather than … and the biosphere), including the global carbon cycle. The JGI is sequencing large numbers of microbes and microbial …
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Ben Bowen
Specializing in mass spectrometry-centered projects, Dr. Bowen’s work focuses on developing high-performance computing workflows and integrating … imaging for in situ kinetic histochemistry. Scientific reports, 3(1), 1656. Rübel, O., Greiner, A., Cholia, S., …
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… around the country recognize that crop varieties grow best in certain regions. Most plant species have adapted to their … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … set up these gardens, we have them to study for a number of years. And that’s a real benefit for the research program.” …
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Refining the Process of Identifying Algae Biotechnology Candidates
… to summary above^ as well ] The Science The recipe for growing algae as a source of sustainable biofuels seems fairly … are tiny but mighty. An analysis in the 2017 Bioeconomy Report estimated that the United States has the capacity to … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Training the Next Generation of Talent
New Graduate Internship Program Builds Bridges Between DOE JGI, UC Merced Days after presenting the results of his … of California, Merced to start orientation as a first-year graduate student in the Quantitative Systems Biology …
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Simon Roux
Dr. Roux joined the JGI in 2017 to lead viral genomics research as part of the … For this role, Dr. Roux can rely on more than 10 years of expertise in the fields of virus ecology and virus …
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Protocols
Find protocols provided by JGI and the JGI user community below for DNA preparation tools, high molecular-weight DNA extraction and RNA preparation.  JGI sample QC protocols can be found here . DNA Extraction …
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The Surprising Structure of a Shrub Willow Sex Chromosome
… the sex chromosomes of mammals is, for the first time, seen in a plant. The Science Sex in plants can be befuddling. … distinguish males and females even when plants with multi-year generation times are young and haven’t physically … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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JGI-UC Merced Interns Share Their 2021 Experiences
During the summer of 2021, 13 interns from UC Merced spent eight weeks working virtually with JGI mentors to investigate rigorous research projects, hone … returned to re-engage with their mentors from the previous year and continue working on their research project! The …
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