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… Questions about the transition from Phytozome v12 to v13. Why is it necessary to retire Phytozome v12? The codebase … preset for the gene in question, so you can download sequences, annotations, and gene structures. These genomes’ … They include Jalview (for viewing and modifying multiple sequence alignments). Variation view on individual gene …
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… to a wide range of JGI user science projects spanning bacteria, fungi, and plants. His team is also developing … and Viola Willemsen. "Two deeply conserved non-coding sequences control PLETHORA1/2 expression and coordinate … platform for long-term monitoring of algae in a dynamic environment." ACS synthetic biology 5, no. 1 (2016): 8-14. …
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… on how the JGI employs single-molecule, long-read DNA sequences to aid with genome assembly and transcriptome … metagenomes can I submit? How deeply are metagenomes sequenced? A: For the next call ( CSP New Investigator ), … count toward the 1Tb cap. PacBio metagenomes are currently sequenced without pooling, which yields ~ 180 Gb of data per …
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… about 200,000 fungal species have been named. Among those sequenced, roughly half of all genes have completely unknown … struggle to identify and classify new species from environmental samples. Meanwhile, even well-studied genomes … entirely new capabilities through partnerships with bacterial symbionts, and how others revolutionized their …
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… worked with a wide range of eukaryotic algae, archaea and bacteria with a view to developing a deeper understanding of sequence-based gene function. … tool for targeted and genome-scale gRNA design and sequence extraction for prokaryotes and eukaryotes. … thermophile from a mesophilic ancestor. Applied and environmental microbiology . 78: 1, 144-155. 2012 …
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… in a bioremediation effort. The Science In 1999, the Environmental Protection Agency declared the North Railroad … from a local dry-cleaner. Researchers identified two bacteria, Dehalococcoides mccartyi and Dehalobacter … and 2010. DNA was extracted from the samples that were sequenced by the U.S. Department of Energy (DOE) Joint …
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