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EcoFAB 2025: Advancing Mechanistic Microbial Science Using Fabricated Ecosystems
… ecosystems across various biological contexts. The program fosters intimate, dynamic interactions, offering an …
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Critical Assessment of Metagenome Interpretation—a benchmark of metagenomics software
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Massie S. Ballon
Graduate Certificate, UC Santa Cruz Science Communications Program Bachelor of Arts, Wesleyan University, Molecular … JGI’s strategic vision, the Institute’s staff and user community. … LBNL Biosciences Area Organizational …
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Marcel Huntemann
… calling, functional annotation and methylomics) that run on microbial genomes and metagenomes. He also works on automating intra-department data exchange and assists with large scale computations on R&D projects. …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory through the Community Science Program . The comparative framework provided by these high … in  Marchantia  and in flowering plant lineages.   With the information about  Marchantia -specific innovations and …
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Enlarging Windows into Understanding Gene Functions
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … His approved proposal through the JGI’s Community Science Program (CSP) focuses on a fungal comparative ENCODE project … multicellular development. “DAP-Seq is the main source of information in the project,” Nagy added. “Since the FUNCODE …
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
… leads the Viral Genomics group within the JGI Metagenome Program, and coordinates the development of the virus and … and management best practices that have advanced the microbial sciences. The Prize also recognizes innovative and … uses a combination of experimental approaches and large-scale data analysis to better characterize how viruses …
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Impact of fire on active layer and permafrost microbial communities and metagenomes in an upland Alaskan boreal forest
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Microbial life under ice: Metagenome diversity and in situ activity of Verrucomicrobia in seasonally ice‐covered Lakes
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JGI-UC Merced Interns Share Their 2021 Experiences
… for their PhD research. And for the first time in this program’s history, two interns returned to re-engage with … P. hallii Mutant Library … Evaluation of Binning Tools for Microbial Eukaryotes in Metagenomes … Functional exploration of Phage Impact on …
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Yasuo Yoshikuni
Yasuo Yoshikuni has been head of the DNA Synthesis Science Program since 2015. The mission of this program is to harness the power of DNA synthesis, strain … sugar polymers in macroalgae and developing the first microbial platform technologies unlocking the potential of …
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Protocols
Find protocols provided by JGI and the JGI user community below for DNA preparation tools, high …
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