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Leo Baumgart
… at the University of California, San Diego. As the Sequencing Technology Implementation Lead, he directs a … responsible for piloting and operationalizing new genomic technologies, integrating automated liquid handling and … production workflows. He developed and scaled the multiDAP-seq assay, a method that enables high-throughput …
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2023 Progress Report
… large-scale data, and professional expertise to support the global research community in studies of complex biological …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… soil. These fungi help shape a forest’s ecology. They store carbon and cycle key nutrients like nitrogen and … at Lawrence Berkeley National Laboratory (Berkeley Lab) sequenced 1 trillion bases — a terabase — of soil RNA for … “In the next few years, I think we will have a kind of global map of the fungal diversity, but we are still missing …
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Natural Prodcast Episode 16: Marcy Balunas
… with any kind of gene cluster identification, doing it with sequence alone you have to have some kind of a template to … Then you have to first– there’s an interplay between the sequence and the chemistry where you have to have one or the … and you should be able to find genes in the organism in its sequence that encode for that biosynthesis. But sometimes …
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Four Researchers Join JGI User Executive Committee
… large-scale AI-ready data and expertise to the global research community to study complex biological and … the development of bio-based products and next-generation technologies, and toward a secure energy portfolio for DOE …
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The Busy World of Deep Sea Eruptions
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Thawing permafrost, microbes, and viruses: Gary Trubl — Part 2
… and isotopes to track how viruses influence the flow of carbon in permafrost.  …
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Nikos Kyrpides
… et al. (2023) Unraveling the functional dark matter through global metagenomics. Nature . 622(7983):594-602. Camargo AP. … Biotechnol . Epub. Neri U. et al. (2022) Expansion of the global RNA virome reveals diverse clades of bacteriophages. … Nature Biotechnol . 39(4):499-509 Danko D, et al. 2021. A global metagenomic map of urban microbiomes and …
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Simon Roux
… development of novel computational tools to identify virus sequences, the design of new experimental approaches to link … Neri et al., 2023. Expansion of the global RNA virome reveals diverse clades of bacteriophages. … 2021. Ecology and molecular targets of hypermutation in the global microbiome. Nature Communications 12, 3076. Roux et …
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Iron-rich Microbial Mats’ Main Players: Marsarchaeota
… Earth conditions. The Science Through a combination of sequencing tools and techniques applied to samples collected … thousands to millions of copies of a particular DNA sequence from just a few pieces of DNA. Summary The extreme …
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From Stress to Growth: The adaptive mechanisms of algae in changing Arctic waters
… This was facilitated in part by RNA library preparation and sequencing from the U.S. Department of Energy (DOE) Joint … was by way of the Fonds de recherche du Québec - Nature et Technologies (FRQNT) for Québec Océan and an FRQNT Team …
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Trent Northen
… with environments to understand how webs of microbes cycle carbon and sustain biomes via the development and …
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