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Methane Makers in Yosemite’s Lakes
… affects freshwater ecosystems, and how those ecosystems work. …
Learn more
The Mobilome in the Mire
… and Simon Roux (JGI) as they talk about their recent work on a time series from Sweden’s Stordalen Mire. …
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Computationally Classifying Fungal Lifestyles
… tree tracking the evolution of  Dothideomycetes fungi. The  work appeared in the June issue of  Studies in Mycology . This work was enabled in part through  JGI’s  Community Science … The work conducted by the U.S. Department of Energy Joint Genome … is supported under Contract No. DE-AC02-05CH11231. The work was also supported by the NSF grants  DEB-1354625 and  …
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Scaling Up Existing Skill Sets
… Doing the JGI internship has given me a great experience working intermediately between academia and industry, which … even know existed before. Seeing the breadth of interesting work being done at the JGI has really motivated me to think … Doing the JGI internship has given me a great experience working intermediately between academia and industry, which …
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Katherine Louie
… of a strong core foundation of robust mass spectrometry workflows for polar and nonpolar metabolite analysis, … profiling over 10k samples/year, Dr. Louie and her team work with other JGI scientists in development of new, …
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Streamlining Regulon Identification in Bacteria
… RIViT-seq expand the known transcriptional regulatory network in bacteria, enabling the discovery of regulatory … identify the associated target genes in 11 of those. That work published in Nature Communications on June 17 , 2022, … deeper understanding of these transcriptional regulatory networks. …
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… a platform widely used across the research community — the work lowers technical barriers for researchers who … Acids Research . The team developed and used an annotation workflow that combines three independent gene-prediction … methods to produce more complete gene models. The JGI workflow consistently recovered all 15 core mitochondrial …
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Identifying the Microbial Cleanup Crew at a Superfund Site
… mccartyi and  Dehalobacter restrictus,  that work together to break down PCE into the chemical compound … The work (proposal:  10.46936/10.25585/60000717 ) conducted by …
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Fishing for Novel Cellulose Degraders
… and mass spectrometry-based enzyme activity assay. The work was  reported in  The ISME Journal . While the screen … ‘Cellulosimonas argentiregionis’ for this microbe. The work is an example of how function-driven genomics, which … The work conducted by the U.S. Department of Energy Joint Genome …
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Dan Rokhsar
… biology. In addition to this evolutionary focus, his work on plant genomics is targeted towards the development …
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Forest Fungi, Seagrass, and a New View of Symbiosis
… cycles. Francis Martin and Lucas Auer discuss their work on communities of forest floor fungi. Allison Joy looks …
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Model Fern Reveals Insight into DNA Thievery in Ferns
… tree of life. Ultimately, the resulting comparative framework can inform the efficient production of plant-based … The work conducted by the US Department of Energy Joint Genome … Energy operated under Contract No. DE-AC02-05CH11231.This work was supported by US National Science Foundation (NSF; …
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