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From Sample Shipments to Sequences – A Tour of the JGI’s Sequencing Pipeline
… Every year, the JGI sequences around 35,000 samples — from plants, algae, bacteria, archaea, fungi, viruses — to support scientists … the world. Most of those researchers send their samples in from afar, without ever hearing much about the sequencing …
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10 From JGI on the 2019 Highly Cited Researchers List
… their 2019 list of Highly Cited Researchers , which includes 10 affiliated with the JGI . The 2019 list focused … Nature Genetics, the work is part of a long-term project to sequence, annotate and analyze the genomes of more than 300 … uncultivated virus genome, including the source, methods of identification of the virus genome, and data quality. Go …
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Natural Prodcast Episode 22: Alison Narayan
… Hey everyone. Welcome back to Natural Prodcast. This continues the series of interviews we recorded at the Society … [project] with JGI, how many flavin monooxygenases are you sequencing, sort of along that vein, of if you have one or … association that might help? Like, if you have an unknown sequence or new flavin monooxygenases, you could say, oh …
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Model Fern Reveals Insight into DNA Thievery in Ferns
… with C. richardii The Science Fern genomes are huge, and incredibly complex — making it difficult to grasp a deeper … duplications, and even more ancient gene transfers from bacteria have all armed the plant with an array of defense … richardii marks the first published manuscript of a genome sequence generated through the OGG. For a long time, C-fern …
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Soil virus offers insight into maintaining microorganisms
… Using the IMG/M data portal, researchers have identified a … AMGs in soil viruses thought to break down chitin, the gene sequences were cloned by the JGI.  The JGI’s DNA synthesis … distinct from similar proteins found in archaea, fungi or bacteria. Certain similarities with bacterial counterparts …
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JGIota: Looking Back at Methane-Making Microbes
… We count on livestock for food and fiber, but raising these animals also produces an atmosphere-warming gas: methane. Those emissions mainly come from gut microbes — the bacteria and archaea breaking down plant matter. So since …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… led by researchers at the University of Texas (UT) at Austin, the HudsonAlpha Institute for Biotechnology … , which can have pronounced ecological and evolutionary consequences. A previous study conducted by our research team … line of research combined with past insights will allow the identification of potentially novel combinations of genetic …
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Crysten Blaby-Haas
… Dr. Blaby-Haas joined the JGI in 2022 as lead of the Biomolecular Materials Initiative, a … on using comparative genomics to predict gene function in bacteria and leveraging molecular biology and reverse … Handling Editor, Journal Experimental Botany, 2022 – present …
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Natural Prodcast Episode 18: A CSP Primer
… UDWARY: It’s been a while, but Natural Prodcast is back again for another round of episodes. If you stick around for … Science program. It used to actually stand for Community Sequencing Program. Also CSP, same acronym. But as JGI, as a … facility, evolved, and as we started to do more than just sequencing, we thought the name community sequencing program …
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Publication Policy
… recognized and credited for their work, while also adhering to the authorship policies of the journal in which the research is published. The JGI has a strong … (see Auspice Statement below) for the generation of sequence or metabolomic data, DNA synthesized, and any other …
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Frederik Schulz
… Dr. Frederik Schulz joined the DOE Joint Genome Institute in 2016 and is leading … Group. His research is focussed on the discovery of novel bacterial, archaeal and eukaryotic microbes and viruses in environmental sequence data. Dr. Schulz employs multi-omics (metagenomics, …
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Nikos Kyrpides
… Dr. Kyrpides joined the DOE Joint Genome Institute in 2004 to lead the Genome Biology Program and the … BA in Biology, Aristotle University of Thessaloniki, Greece PhD in Molecular Biology and Biotechnology, University of Crete, … Nature . 622(7983):594-602. Camargo AP. et al. (2023) Identification of mobile genetic elements with geNomad. Nat …
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