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Comparative genomics reveals insights into characterization and distribution of quorum sensing-related genes in Shewanella algae from marine environment and clinical sources
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Comparative Analyses of Four Reference Genomes Reveal Exceptional Diversity and Weak Linked Selection in the Yellow Monkeyflower (Mimulus guttatus) Complex
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
… Laboratory (Berkeley Lab), generated genome sequences for nearly 600 green millet plants and released a very high … Program , sequences of several hundred green millet plant genomes were generated, though the final analyses focused on … Schmutz and his team assembled and annotated the genomes at HudsonAlpha. Sujan Mamidi and Adam Healey, two of …
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A Collaboration to Improve Plant Genome Annotations Across Species
… Avinash:   JGI puts huge efforts into generating reference genomes for new species allowing it to fill gaps in the … an average of 40 percent of genes across Gene Atlas plants. Comparing orthologs among common gene sets between species …
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
… Sequencing genetic material directly from samples sidesteps these challenges, since it doesn’t require this kind of lab culture. Beginning in the early 2000s , these environmental metagenomes began to offer a window into viral existence. Along …
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Tina Clarke
… her BA degree in Psychology from Sonoma State University. Early on, Ms. Clarke knew the importance of understanding …
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The More the Merrier: Making the Case for Plant Pan-genomes
… the concept, “the more the merrier,” with respect to their genomes. In their base state, they are diploids with two … flowering plants; at least once during their evolution, the genomes of flowering plants multiply. Over time, plants lose many genes after such events, returning their genomes to a diploid state while retaining multiple copies …
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Comparative transcriptomics uncovers poplar and fungal genetic determinants of ectomycorrhizal compatibility
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JGI@25: Roots of a Mutualist Relationship
… Food and Environment (INRAE). Today, there are nearly 200 mycorrhizal fungal genomes publicly available on the fungal portal MycoCosm, many sequenced through the JGI 1000 Fungal Genomes Project.       Francis Martin on the main impact of …
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Building Wet and Dry Lab Skills
… supervision of their mentors, they were responsible for all steps of the experiment from growing and inoculating the … composition. This gave them an opportunity to learn all steps including both wet lab and computational analysis. …
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Improving the Cacao Genome and Phytozome
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… and genome size from small, to large and even giant. The genomes of giant viruses are on the order of 100 times the … what has typically been associated with viruses, while the genomes of large viruses may be only 10 times larger. And … to take a more global look at giant viruses by capturing genomes of uncultivated giant viruses from environmental …
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