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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… team  announced in  Nature Microbiology an important addition to the synthetic biologist’s toolkit: a technique for  c … us to assess CRAGE’s impact, including how this application could scale,” says Mouncey. The JGI team has already … (Berkeley Lab) Newscenter story and this piece in  Current Opinion in Biotechnology . Now, CRAGE is being …
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Building Wet and Dry Lab Skills
… Summer 2025 marked the second year of Alabama A&M University students coming to the … the previous year’s project, undergraduate interns Tamyra Long and Zyiah Mikes worked with mentors Yi Zhai and John … mentor for our experimental work or our wet lab stuff. Our current project is how root transporters and root exudates …
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Igor Grigoriev
… at the JGI, a Senior Scientist at Lawrence Berkeley National Laboratory, and an Adjunct Professor of Plant and … Biology at University of California, Berkeley. He contributed to the Human Genome Project and led annotation and analysis of diverse eukaryotic genomes, from protists …
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Len Pennacchio
… joined the DOE Joint Genome Institute and has focused on applying state-of-the-art molecular methods to address wide-ranging questions existing in biology. He holds joint appointments as a … of a rare form of human epilepsy and subsequently generated one of the first mouse models for this common neurological …
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Scaling Up Existing Skill Sets
… opportunities in fields ranging from plant-microbe interactions to functional genomics. Hear from five of the Summer 2019 interns, … briefly shared their experiences below. Name: Noelle Anderson Class Year: At the time of the internship, 4th year PhD …
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Webinar: PhycoCosm Tutorial
… about JGI’s  PhycoCosm data portal , an interactive collection of sequenced algal genomes, omics data and comparative analysis tools. Questions and Answers 1.  Q(uestion): Why would your Tree ever differ from NCBI Taxonomy? … of Science User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in …
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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… over the last  25-plus years since the JGI’s inception, making it possible for researchers to get a close look … than ever before. In 2006, the JGI produced 33 billion base pairs of sequence; by 2023, that number was almost 717 trillion. Last year, the JGI surpassed three Petabases of data …
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Giant Bacteria Found in Guadeloupe Mangroves Challenge Traditional Concepts
… 5,000 times bigger than most bacteria. To put it into context, it would be like a human encountering another human … complexity in much more detail than what is being done currently. So organisms that we think are very, very simple … of Ca. Thiomargarita magnifica challenges the current paradigm of what constitutes a bacterial cell and …
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Leo Baumgart
… San Diego. As the Sequencing Technology Implementation Lead, he directs a multidisciplinary team responsible for piloting and operationalizing new genomic technologies, integrating automated … training in bioinformatics, Lawrence Berkeley National Lab … Baumgart, Leo A., Sharon I. Greenblum, Abraham Morales-Cruz, Peng Wang, Yu Zhang, …
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Nikos Kyrpides
… combined Microbial Genomes and Metagenomes Program since 2011. Prior to joining the DOE Joint Genome Institute, Dr. … at the University of Illinois at Urbana-Champaign and at Argonne National Laboratory. Dr. Kyrpides’ research focus on Microbiome … BA in Biology, Aristotle University of Thessaloniki, Greece PhD in Molecular Biology and Biotechnology, …
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A Step Toward Controlling Soybean Rust
… Rust (ASR) and is the major pathogen of soybean. Left uncontrolled, soybean rust could reduce crop yields by as much … Program portfolio , Sebastien Duplessis of the French National Institute for Agricultural Research (INRA)  proposed … of Science User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in …
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Jane Grimwood Named HudsonAlpha Genomics Chair
… Congratulations to Jane Grimwood, who has been appointed the … large-scale multi-institutional JGI projects and resulting publications that Grimwood contributed to include: A 2021 … As well as the seminal Human Genome Project DOE Chromosome publications: The DNA sequence and biology of human …
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