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… data resources, researchers built an interactive and comprehensive database of fermentative prokaryotes. The Science … Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab), and the DOE Systems Biology Knowledgebase (KBase). They also built an …

… Across four forests, researchers have leveraged data from the 1000 Fungal Genomes project to form new connections between fungal guilds, genes … Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab) sequenced 1 trillion bases — a …

… attended a conference in Florida to discuss a JGI pilot project involving soil sampling in the Florida Everglades to … It took the coming together of many unlikely pieces across the United States to enable the class to perform … and organic carbon concentration. From Field Studies to Publication Together as a class, the students learned about …

… in soil and can be used as biocontrol agents and to promote plant growth. It is the largest genus within … and therefore a cornerstone of ActinoBase,  a public platform built on the knowledge of researchers studying … Nigel Mouncey, has launched its  Secondary Metabolite Collaboratory, currently in beta form as the group seeks early …

… and the archaeal lineages found there and elsewhere provide researchers with insights into the evolution of life … iron-oxide microbial mats. The reddish hues caused by the presence of iron led Inskeep and his colleagues to name the … transcriptomics for microbial genomic activity (gene expression), and direct microscopy. Through the JGI’s …

… reflects a structural shift in data access. Users were previously limited to accessing data sets within groups, … effort to create a common set of ‘baseline metadata’ across the files that are submitted by each scientific … requires that users know about the FY Funding Year, and the publication status in addition to the public/private status. …

… can be befuddling. Most species are hermaphrodites, expressing both male and female gametes in one individual. But … of XX. But, like some plant and songbird species, the system in shrub willow is flipped: females are … team, which included scientists from Oak Ridge National Laboratory and the U.S. Department of Energy (DOE) Joint …

… fungi have lived in symbiosis with plant roots. Plants provide photosynthesized carbon, while fungi deliver water … sequencing to understand gene expression: one of the first cross-kingdom spatially-resolved transcriptomics studies to … Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab). Specific understanding of this …

… multiple copies of some genes. This polyploidization process is ongoing and many plants, including agricultural … Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab), relied on a model grass system … B. hybridum types don’t interbreed. “Preliminary artificial crossing experiments between ancestral and recent  B. …

… apply bioinformatics software to enable analysis and interpretation of genomic and metagenomic data for JGI’s user community. She also provides support for user science and projects through … implementation of microservices in conjunction with the IMG platform. …

… are genetic entities that seek to replicate themselves and spread from cell to cell. Two of the most common forms of … of Science User Facility at Lawrence Berkeley National Laboratory (Berkeley Lab), with computing resources provided … through the National Microbiome Data Collaborative’s EDGE platform. The Impact In order to gain more insights into …

… directly with specific universities, continuing education programs in the Bay Area, and established programs affiliated with the Berkeley Lab A-LIFT team.    … JGI’s role in enabling complex biological and environmental systems research.  … Modeled on the JGI-UC Merced internship program, a similar collaboration with AAMU was launched in …