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JGI & KBase at PAG XXVII
… takes place January 12-16, 2019, in San Diego, Calif. Representatives from the DOE Joint Genome Institute (JGI) and the  DOE Systems Biology Knowledgebase (KBase) will be at Booth 509. Stop by and chat with representatives from KBase and the JGI about collaborative …
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Applying Viral Genomics Expertise to Understanding the Human Virome
… lend expertise to develop tools and data hub for NIH program. While the microbes in, on and around Earth … Science user facility located at Lawrence Berkeley National Laboratory, have collaborated with global researchers on … (i) classifying viruses into groups that can be compared across studies, (ii) predicting which hosts these viruses are …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab) describe a computational pipeline … not just crops, animals and humans, but also microbes whose presence or absence can impact the planet’s nutrient cycles. … “But same as DNA viruses, RNA viruses infect microbes all across the world and lead to cell death and/or profound …
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
… grass with a short lifecycle that uses a carbon fixation process known as the C4 pathway, which particularly helps … Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab), generated genome sequences for … genome infrastructure with a reasonably accessible system,” said Schmutz. “Building the pan-genome and …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
A group led by JGI scientists have made strides in improving and applying a method that allows researchers to … has already demonstrated CRAGE as a versatile engineering system that allows scientists to conduct genome-wide screens … For more on this feat, see this Lawrence Berkeley National Laboratory (Berkeley Lab) Newscenter story and this piece …
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JGI@25: Using Team Science to Build Communities Around Data
… help solve energy and environmental challenges. The 1KFG project represents affiliations at over 180 organizations in … genomes that are both large and complex. The first publication of a genome generated by the OGG initiative — … way to connect genes and infer changes in gene function across the phylogeny — and link these into our DOE crop …
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Identifying the Microbial Cleanup Crew at a Superfund Site
… effort. The Science In 1999, the Environmental Protection Agency declared the North Railroad Avenue Plume … Science User Facility located at Lawrence Berkeley National Laboratory and used to identify the microbes involved in … JGI’s  Integrated Microbial Genomes and Microbiomes (IMG/M) system. For example, the team has since identified  …
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Engagement Webinar: How to Successfully Apply for a CSP Proposal
On September 1, JGI held a JGI Engagement: Pro Tips for Successful Community Science Program (CSP) … data analysis. It is a free, open source analytics platform provided to the research community by DOE. … User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in support of …
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Marine Microbe Contains Multitudes
… surface, to the blue-lit twilight zone, to the continuous pressure of the dark abyss, 4000 m (2.5 miles) deep. … Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab), through the JGI Community Science … the JGI Integrated Microbial Genomes & Microbiomes (IMG/M) system . By analyzing the metagenomes, metatranscriptomes …
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
… organisms. As they infect microbes like bacteria, algae and protists, all kinds of viruses impact many ecological … or not you planned it, viruses are most likely in your system and in your data, and they’re probably influencing … Camargo developed a new pipeline for identifying viruses across many thousands of genomes and metagenomes, called …
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Understanding Wildfire Recovery, Starting in Soil
A metagenomic look at the soil microbes present a year after a wildfire. The Science After a … health, researchers have taken a look at microbial genomes across a spectrum of burned soils. By connecting microbial … State University, the Environmental Molecular Sciences Laboratory and the U.S. Department of Energy (DOE) Joint …
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Refining the Process of Identifying Algae Biotechnology Candidates
… can grow, and then harvest for use as biofuels and other bioproducts. As any good cook knows, recipes can be refined for … the right ingredients. Researchers collaborating across multiple institutions have sequenced and analyzed the … Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab), the National Renewable Energy …
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