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Understanding Wildfire Recovery, Starting in Soil
… Within the soil, a microbiome of bacteria, viruses and fungi process carbon and nitrogen, paving the way for future … at microbial genomes across a spectrum of burned soils. By connecting microbial genes with functions useful for … The team’s research at both the JGI and EMSL was enabled by the Facilities Integrating Collaborations for User …
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Game On: High School Students Drive Everglades Metagenomics Study
… and organic carbon concentration. From Field Studies to Publication Together as a class, the students learned about … to the body of scientific knowledge that can be accessed by the rest of the community. These high school students now …
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Co‑cultivation of the anaerobic fungus Caecomyces churrovis with Methanobacterium bryantii enhances transcription of carbohydrate binding modules, dockerins, and pyruvate formate lyases on specific substrates
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Genome sequence of Phaeobacter daeponensis type strain (DSM 23529T), a facultatively anaerobic bacterium isolated from marine sediment, and emendation of Phaeobacter daeponensis
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Computationally Classifying Fungal Lifestyles
… genomes of Dothideomycetes, the largest class of fungi, by lifestyles. The machine “learned” to identify data … regarding the effects of climate change. Summary A team led by researchers at the U.S. Department of Energy (DOE) Joint … The work conducted by the U.S. Department of Energy Joint Genome Institute, a …
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Biotech Partners Summer Intern Co-Authors NAR Paper
… program is now an author on a Nucleic Acids Research publication. The paper describes the version 6 data updates … to the Genomes OnLine Database (GOLD) administered by the DOE JGI. T.B.K Reddy, Kaushal‘s mentor, described his …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… the sound — one thing is for sure: there are lots of fungi around. Within a forest’s soil, hundreds of species … and deliver those nutrients to tree roots and soil. These fungi help shape a forest’s ecology. They store carbon and … key nutrients like nitrogen and phosphorus.  This way, the fungi of forest soils hold keys to tree health and carbon …
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Natural Prodcast Episode 6: Marc Chevrette
… more about Tiny Earth and the JGI’s role in the project by watching Amanda Hurley’s presentation from the 2019 JGI … conference in Canada on antimicrobial resistance sponsored by the Garner foundation. And they’re really excited about … metabolomics, and natural products in plants, fungi, and microorganisms. If you want to collaborate, let …
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Natural Prodcast Episode 9: Roger Linington
… Biodiversity Groups, and it’s this great program funded by the National Institutes of Health and the National … Groups program, a really amazing program, funded by the National Institutes of Health. DAN:  All right, why … metabolomics, and natural products in plants, fungi, and microorganisms. If you want to collaborate, let …
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Trent Northen
… Swift CL, et al. Anaerobic gut fungi are an untapped reservoir of natural products. … is depth stratified, rainfall dependent, and is mediated by genomically divergent microorganisms. Nature Microbiology … Award for Science and Engineering (PECASE) awarded by President Obama Dr. Northen currently serves as the …
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JGI@25: Roots of a Mutualist Relationship
…       Francis Martin on the main impact of ectomycorrhizal fungi, excerpted from his talk at the 2015 JGI Annual …
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Leo Baumgart
… wide range of JGI user science projects spanning bacteria, fungi, and plants. His team is also developing single-nuclei … S., Alexandra M. Linz, Leo A. Baumgart, Yu Zhang, Ian Blaby, Ritesh Mewalal, Vivian Ng, Daniel R. Noguera, and … Selected Publications …
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