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Whole metagenome sequencing and 16S rRNA gene amplicon analyses reveal the complex microbiome responsible for the success of enhanced in-situ reductive dechlorination (ERD) of a tetrachloroethene-contaminated Superfund site
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How Filamentous Fungi Sense Food
… . The Science A team led by researchers at the University of California, Berkeley used a multi-omics approach to … N. crassa is the model organism for filamentous fungi, all of which contain a wide array of plant cell-wall degrading enzymes (PCWDEs) that allow …
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MGM Workshop at Fisabio Summer School 2025
… Register here The workshop is addressed to students and professionals of biology, biomedical research, the health sciences and … research results in genomics, metagenomics and the human microbiome. The workshop will train participants in …
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Microbial Genomics & Metagenomics (MGM) Workshop
… Registration has closed.  The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is offering a five-day workshop on Microbial Genomics and … familiarize users with the Integrated Microbial Genomes & Microbiomes (IMG/M) data and workflows for computational …
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Marine Microbe Contains Multitudes
… microbial genomics reveals one bacterial species is made of four ecologically distinct groups with different … to the blue-lit twilight zone, to the continuous pressure of the dark abyss, 4000 m (2.5 miles) deep. Scientists have … many varied environments? Now, a recent study published in Microbiome has uncovered that SAR324 encompasses four …
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EcoFAB 2025: Advancing Mechanistic Microbial Science Using Fabricated Ecosystems
… and applying laboratory ecosystems to help transition microbiome science from largely observational to … studies.  This conference is inspired by the vision of standardized fabricated ecosystems (EcoFABs) designed for precise manipulation and reproducible …
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Secrets of the Needles: What Microbes do on Conifer Leaves
… Novel study looks at microbiomes in aerial surfaces of plants and their roles in … The phyllosphere, which is known as the aerial surface of plants, is a comparatively understudied area of forest … ) conducted by the U.S. Department of Energy Joint Genome Institute ( https://ror.org/04xm1d337 …
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Open Frameworks Training the Next Generation of Scientists
… technologies provide opportunities for students and professors alike The Science In  PLoS Pathogens , a team of faculty and researchers describe a workforce development … biology analysis. KBase also supports  MICROnet (Microbiomes In Computational Research Opportunities …
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Biotech Partners Summer Intern Co-Authors NAR Paper
… Kaushal Sharma, one of five Antioch High School rising juniors who participated … program is now an author on a Nucleic Acids Research publication. The paper describes the version 6 data updates … in GOLD. “Besides these, he curated several small sets of phylogeny, biosample metadata tasks we assigned.”       …
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Soil virus offers insight into maintaining microorganisms
… The work was enabled in part by a community data portal of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office … retrieved using the  JGI’s Integrated Microbial Genomes & Microbiomes (IMG/M) data portal. The IMG suite is a … This work was supported by the Department of Energy (DOE) Office of Biological and Environmental …
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New Vision, New Mission, New Plan: The JGI’s Next Five Years
… for the global research community. The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) has released … jointgeno.me/2024StrategicPlan .) This plan aligns the DOE Office of Science user facility with broader national … understanding how climate change might contribute to the emergence of new pathogens. “ By sharing our vision broadly …
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JGI Launches Latest Strategic Plan
… For the Joint Genome Institute, the end of 2018 was marked by a celebration of contributing over one “petabase” – a quadrillion … JGI supports, include JGI’s emerging leadership role in a Microbiome Data Science effort (pages 37-39) and the …
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