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Genomic Features Predict Bacterial Life History Strategies in Soil, as Identified by Metagenomic Stable Isotope Probing
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Mission
… JGI Mission As a U.S. Department of Energy Office of Science user facility, we provide advanced genomic … and manufacturing. Genomic science lies at the heart of biology, providing the foundational knowledge to … and bioproducts: JGI user research advances understanding of biological processes that enable cost-effective energy …
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Polysaccharide utilization loci of North Sea Flavobacteriia as basis for using SusC/D-protein expression for predicting major phytoplankton glycans
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Flow cytometric monitoring of bacterioplankton phenotypic diversity predicts high population‐specific feeding rates by invasive dreissenid mussels
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Codon bias, nucleotide selection, and genome size predict in situ bacterial growth rate and transcription in rewetted soil
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A User-Centered Approach to Accessing JGI Data
… through the plant portal  Phytozome . Now the portal offers a way for users to more easily access public data sets through a common set of metadata. For Steve Wilson, JGI’s Systems Engineering … requires that users know about the FY Funding Year, and the publication status in addition to the public/private status. …
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Green Algae Reveal One mRNA Encodes Many Proteins
… a single protein. Recently reported in the Proceedings of the National Academy of Sciences , a team of researchers has found numerous … algae and kept seeing what looked like mistakes by the gene prediction algorithms. I decided to dig in a little deeper, … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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The complete mitochondrial genome of the conifer needle endophyte, Phialocephala scopiformis DAOMC 229536 confirms evolutionary division within the fungal Phialocephala fortinii s.l. – Acephala appalanata species complex
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Baltic Sea coastal sediment-bound eukaryotes have increased year-round activities under predicted climate change related warming
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Scaling High‐Resolution Soil Organic Matter Composition to Improve Predictions of Potential Soil Respiration Across the Continental United States
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An Automated Tool for Assessing Virus Data Quality
… (metagenomes). However, the quality and completeness of metagenome-assembled virus sequences vary widely. In a … to accurately perform functional assessment, host prediction, and phylogenetic analysis. The development of … genome versus those from the host organism. Without this prediction step, numerous genes for antibiotic resistance …
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Statement on the Use of Genomics Data
… The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is committed to … are requested to be held until a specified date, or the publication date, whichever comes first. For nearly 40 … by the community regarding the use of JGI data prior to publication by the principal investigators. To resolve these …
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