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MIBiG 3.0: a community-driven effort to annotate experimentally validated biosynthetic gene clusters.
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A Community Resource for Secondary Metabolite Researchers
… The Secondary Metabolism Collaboratory encourages user engagement. The Science In addition to … more than 13 million BGCs in the catalog at the time of publication, it is the largest repository of BGC sequence … it is a BGC repository that aspires to FAIR (findable, accessible, interoperable and reproducible) principles and …
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Identifying the Microbial Cleanup Crew at a Superfund Site
… site. The chemical PCE (perchloroethylene) found its way into the groundwater of several communities in New Mexico via … , they were able to analyze the resulting metagenomic data. (Data from the project are available on the  JGI … microbes that contribute to the cleanup by continuing to access the JGI’s  Integrated Microbial Genomes and …
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Scaffolded and annotated nuclear and organelle genomes of the North American brown alga Saccharina latissima
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Draft genome assembly and annotation of Haematococcus lacustris strain Liv1, an industrial astaxanthin-producing microalga
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GenomeOcean Leverages AI to Decode Nature’s Secret Language
… Trained on environmental data, a new JGI tool more accurately facilitates microbial … Lake project. The model’s training also included early access to the largest biosynthetic gene cluster data set … User Facility located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in support of DOE …
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Webinar: SIP technologies at EMSL and JGI
… The Environmental Molecular Sciences Laboratory (EMSL) and the Joint Genome Institute (JGI) provide access to a variety of tools that leverage stable isotopes … with. 2. Q: What would a typical turnaround time be for data once samples are in hand at JGI? A: It takes a few …
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Natural Prodcast Episode 5: Brad Moore
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s … recorded at the SIMB Natural Products conference, which took place last January 2020 in San Diego. San Diego, of … before you see toxin. And we have some preliminary data with other samples that we do see days to a week of a …
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PlantSEED enables automated annotation and reconstruction of plant primary metabolism with improved compartmentalization and comparative consistency
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Resequencing and annotation of the Nostoc punctiforme ATTC 29133 genome: facilitating biofuel and high-value chemical production
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Driving through stop signs: predicting stop codon reassignment improves functional annotation of bacteriophages
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MVP: a modular viromics pipeline to identify, filter, cluster, annotate, and bin viruses from metagenomes.
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