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Enlarging Windows into Understanding Gene Functions
JGI innovates protocol revealing how genetic variations in sequences affect traits. In a text file, the rows of letters … array of combinations, are unremarkable, save perhaps for the absence of all the other letters of the alphabet. … (cDNA), reducing the amount of time it takes to produce a dataset from months to days and halving the total reagent …
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Sequence to Function: Applications and Analysis for the Future (SFA²F)
The Sequence to Function: Applications and Analysis for the … discussions, workshops, and informal networking events. JGI will present both a genome center talk and a tech talk. …
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The Expanding Universe of Methane Metabolisms in Archaea
… of the Earth’s atmosphere and regulating the global climate for life to flourish. For Guillaume Borrel and Simonetta … the Integrated Microbial Genomes & Microbiomes (IMG/M) database maintained by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, for publicly …
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How Filamentous Fungi Sense Food
Science A team led by researchers at the University of California, Berkeley used a multi-omics approach to reconstruct … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … genes. This first paper integrating multi-omics data from this JGI fungal ENCODE proposal was  recently …
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Gene Context Analysis in the Integrated Microbial Genomes (IMG) Data Management System
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SoyCSN: Soybean context‐specific network analysis and prediction based on tissue‐specific transcriptome data
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The Physcomitrella patens gene atlas project: large‐scale RNA‐seq based expression data
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Genome Data Provides High Support for Generic Boundaries in Burkholderia Sensu Lato
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Exploiting proteomic data for genome annotation and gene model validation in Aspergillus niger
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Statistical analysis of feature-based molecular networking results from non-targeted metabolomics data
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The IMG/M data management and analysis system v.7: content updates and new features.
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Identifying the Microbial Cleanup Crew at a Superfund Site
… the microbial community involved in a bioremediation effort. The Science In 1999, the Environmental Protection … and 2010. DNA was extracted from the samples that were sequenced by the U.S. Department of Energy (DOE) Joint … , they were able to analyze the resulting metagenomic data. (Data from the project are available on the  JGI …
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