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Toward a Data Infrastructure for the Plant Cell Atlas.
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Visualizing metagenomic and metatranscriptomic data: A comprehensive review
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JGI Interns at UC Merced Earn CAMP Merit Awards
… As part of the ongoing partnership between DOE JGI and UC Merced to promote diversity and inclusion in … Gutierrez Huerta and Bryan Rangel Alvarez, both California Alliance for Minority Participation (CAMP) students at UC Merced. …
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MycoCosm, the JGI’s Fungal Genome Portal for Comparative Genomic and Multiomics Data Analyses
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Steven Wilson
… Systems Engineering Group lead.   The group is responsible for developing and supporting applications that span the … project and work order creation and management, automated sequence quality control and automation of microbial/metagenomic assemblies, portals that make data available to the public, and our institutional website. …
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Year in Review: JGI’s 2018 Progress Report Available Now
… is an image of Mono Lake, a saline soda lake east of California’s Yosemite National Park, taken by JGI’s own Jon Bertsch. Microbes isolated from Mono Lake were sequenced by the JGI (isolates here , here and here ), and the data has been used to better understand arsenic mobility and …
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Jeremy Schmutz
… Mr. Schmutz’s involvement with the JGI dates back to 1997, when he was working for the Stanford Human Genome Center, now the HudsonAlpha … Institute and the collaborative projects funded through the CSP program. In addition to continuing to develop strategies …
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Non-contiguous finished genome sequence and contextual data of the filamentous soil bacterium Ktedonobacter racemifer type strain (SOSP1-21T)
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Eelgrass Proves to Be Much Younger Than We Thought
… most abundant plants in the ocean, originated in Japan before spreading around the globe. Now, scientists have shed … Nature Plants , was able to assess absolute time estimates for major colonization events. It was previously assumed, … locations.  One group investigated changes in protein sequences, while others analyzed single point mutations …
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From Sample Shipments to Sequences – A Tour of the JGI’s Sequencing Pipeline
… Every year, the JGI sequences around 35,000 samples — from plants, algae, … the sequencing lab. So today, Chris Daum walks through the JGI’s sequencing pipeline, where there are freezers with …
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A Complex Confection Decoded: Sugarcane Reference Genome
… world’s most harvested crop by tonnage, sugarcane accounts for 80% of global sugar production. A reference genome for … Community Science Program; in 2018, a monoploid reference sequence of sugarcane was published as a step forward in … The reference genome of R570 is available on the JGI plant data portal,  Phytozome .   …
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Data shopping in an open marketplace: Introducing the Ontogrator web application for marking up data using ontologies and browsing using facets
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