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Rex Malmstrom
… also carries out custom preparative work for difficult user projects, including those that require fluorescence … unicellular marine predators.  PNAS 116 (41), 20574-20583 Couradeau, J.S. et al. 2019. Probing the active fraction of … sweeps in natural bacterial populations. ISME Journal 10 (7), 1589 Kashtan, N et al. 2014. Single-cell …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… evolutionary consequences. A previous study conducted by our research team surveying the genomic and phenotypic … across the species. These are primarily tetraploids (4X or four copies of the genome) and octoploids (8X or eight copies … variations between the common gardens, indicating a generalist (8X)-specialist (4X) tradeoff. Furthermore, niche …
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Celebrating a Decade of Science through the JGI-UC Merced Genomics Internship Program
… partnership had become a “model” of sorts at the Lab. “This project represents part of our long term efforts to contribute towards a diverse … scientist and program mentor, discussed how “advocating and listening to the interns and learning their perspectives and …
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A Mentor’s Perspective on Training the Next Generation
… the globe to gain lab experience and contribute to ongoing projects. In one way or another, they’ve all mentioned how …
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Enlarging Windows into Understanding Gene Functions
… of the alphabet. Yet the specific sequence of these four letters represents an organism’s genetic code, or … Program (CSP) focuses on a fungal comparative ENCODE project known as FUNCODE. “We noticed a few years ago that … and multicellular development. “DAP-Seq is the main source of information in the project,” Nagy added. “Since the …
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RECAP: Multi-Omic Journeys with 2023 JGI Annual Meeting Keynotes
… a keynote speaker addressed the conference, sharing the journeys of their research careers, and showcasing the broad … new views of how nutrients cycle through ecosystems. Of course, some of those collaborators, like Jennifer … that the JGI has put together. In collaboration on a project with the Newman lab, an important question arose: …
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2025 NeLLi Symposium
… to ensure accurate headcounts. * Optional Dinner and Tour of The Mob Museum on Nov. 5 This optional event includes dinner, distillery tasting, and tours of the Mob Museum and Fremont Street Experience. It … up to $50 cash to cover transportation, dinner, and the tour. (Participants will meet at the hotel lobby to take a …
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Dispatches From JGI Interns
… and graduate students to engage in real, impactful research projects with JGI mentors. In this episode, hear two interns …
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From Berkeley to Binghamton: Tracking Strawberry Evolution
… genes from all possible candidate ancestors are available. Our method clearly identifies the four subgenomes based on non-genic sequences.”  In his words, … specific procedure.” The rapport they built during this project and others (including the dissertation that preceded …
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Polar Phytoplankton Need Zinc to Cope with the Cold
… Program makes genomes and multi-omics data from JGI CSP projects publicly available at the PhycoCosm portal . … working to address some of the most pressing challenges of our time. For more information, please visit  …
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Leo Baumgart
… which has been applied to a wide range of JGI user science projects spanning bacteria, fungi, and plants. His team is … DSM12444 transcription factors." Microbiology Resource Announcements 14, no. 8 (2025): e00260-25. Cassol, …
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Exploring Possibilities: 2022 JGI-UC Merced Interns
… enough experience to make really good contributions to the project. Also my area of expertise over the past couple … the same problem. We can research on the internet and share our findings. And that was really important for me.  Tyrome … macro and micro level, which was really cool for me. It encouraged me to keep looking at the possibility of working at …
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