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Genome sequences of four novel Endozoicomonas strains associated with a tropical octocoral in a long-term aquarium facility.
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Mindfully Moving JGI
Berkeley Lab campus. By Friday, October 18, the production sequencing labs in Building 100 were silent. Twenty years … Walnut Creek, after countless generations of sequencing platforms (up to 120 sequencing machines at maximum) maintained … week up and operating is a great story and a testament to our extensive move planning efforts!” cheered JGI’s …
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Doubling Down on Known Protein Families
… cannot be cultivated in lab settings. Since each microbial community has its own unique makeup of microbe players and … replicating a whole community is impossible.  Metagenomic sequencing allows researchers to study the entire genetic … diversity has doubled, but in reality it could be three or four or five or tenfold more out there.” Digging Further into …
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Intrinsic and Extrinsic Programming of Product Chain Length and Release Mode in Fungal Collaborating Iterative Polyketide Synthases
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Community standards and future opportunities for synthetic communities in plant–microbiota research
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Filling in the Plant Tree of Life
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The Case for Conservation
The genome assemblies highlight the multiple advances in sequencing technologies applied to the effort. The Impact … comprise a full third of each moss genome, and are almost four times the size of the next largest chromosome. As the … so rapidly in gene content and structure. He and JGI Plant Program head Jeremy Schmutz already see how lessons from …
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Genome sequencing of four Aureobasidium pullulans varieties: biotechnological potential, stress tolerance, and description of new species
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… catalyzed by microbial communities. By pairing RNA or DNA sequencing with tracings of stable, heavy isotopes, SIP … in activity as well; at any given time, many species in a community may be in ‘low power mode’, where they do very … process. The isotope labeling incubations can take hours to months, followed by weeks of tricky, laborious lab …
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Olpidium, The Key to the Origin of Terrestrial Fungi
Before 2006, Olpidium was one of the many obscure fungi of … the zoospores were then sent to the JGI for whole genome sequencing using the Illumina platform. Unfortunately, both … the much more extensive taxonomic and genetic sampling, our study confirmed the affinity between Olpidium and the …
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A Natural Mechanism Can Turbocharge Viral Evolution
… a fishing line, without harming the rest of the microbial community. The study’s publicly available dataset gives … under contract no. DE-AC02-05CH11231. This research used resources of the National Energy Research Scientific Computing … DE-AC02-05CH11231 through the Community Science Program (CSP), the G. Unger Vetlesen and Ambrose Monell Foundations, …
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A programmable droplet-based microfluidic device applied to multiparameter analysis of single microbes and microbial communities
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