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Accelerating Metagenomics Discoveries with Deep Learning
… algorithm — a convolutional neural network, called  ResNet 34   — in order to vectorize protein sequences. Sevim is …
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From Stress to Growth: The adaptive mechanisms of algae in changing Arctic waters
… summer sea ice in the Arctic has decreased by more than 30% in terms of quantity and thickness. Replacing older, … of Canada-Compute Canada facilities. The work (10.46936/10.25585/60001017) conducted by the U.S. Department of Energy …
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A One-Stop Shop for Analyzing Algal Genomes
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The fungus that made itself at home
… to thrive in manmade environments. As reported January 5, 2018 in The ISME Journal , a team led by University of … the U.S. Department of Energy under Contract No. DE-AC02-05CH11231. …
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Mapping the Earth’s Hidden Fungal Kingdom
… has been evolving for 82 million years, making it nearly 30 times older than the entire human lineage. Yet despite … of DNA base pairs, most fungal genomes contain fewer than 50 million — small enough that thousands can be sequenced …
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Defining a Pan-Genome for Antarctic Archaea
… work was supported by the Australian Research Council (DP150100244) and the Australian Antarctic Science program (project 4031). The work conducted by the US Department of Energy Joint … US Department of Energy under contract no. DE-AC02-05CH11231. S.E. was supported by the EMBO Long-Term Fellowship ALTF …
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Building Sphagnum Genomic Resources
… matter, and researchers estimate that they hold about 25 percent of the world’s soil carbon. In high latitudes, … carbon is stored in peatlands, which make up nearly 3 percent of the earth’s land surface. In the New … U.S. Department of Energy under Contract No. DE-AC02-05CH11231. For the sphagnome project, germplasm establishment and …
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Understanding Wildfire Recovery, Starting in Soil
… work was supported through a USDA NIFA award (2021-67019-34608) to M.J.W. FTICR-MS analyses were performed under the … Molecular Sciences Laboratory (proposal ID 49615), which is a DOE Office of Science User Facility. This …
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JGI at the AGU Fall Meeting
… (all times in PST unless otherwise noted): December 7   9:15am PT (online) Town Hall on the role of user facilities in … User Facilities in One Proposal via FICUS December 13 8:12 am Convention Center eLightning Theater IV: Kuno … California” December 14 8:05am Convention Center, Rm 231-232: Josue Rodriguez-Ramos, Colorado State University …
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Mindfully Moving JGI
… Turner. How extensive? Consider that the process of moving 250 people and their equipment from 4 single-story buildings …
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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… PacBio? A(nswer):  Regular PacBio typically requires ~ 1.5-10 ㎍. Low-input protocols are continuously improved, but currently require input in the ~ 30 – 100ng range. Note that beyond quantity, input quality … involves PCR amplification of the library. 6mA and 4mC (~50x depth), 5mC (~250x depth required). Methylation …
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DAS Tool for Genome Reconstruction from Metagenomes
… of the Emerging Technologies Opportunity Program in 2013, a team of researchers has been working on improving … (CAMI) Challenge, a competition launched in 2015 by a community initiative, with varying numbers of genomes … to tackle metagenomes with low (40 genomes) to high (596 genomes) complexity. The environmental datasets included …
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