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Igor Grigoriev
Dr. Grigoriev joined the DOE Joint Genome Institute in 2003, following his postdoctoral training at UC Berkeley and … the JGI Fungal Genomics program which resulted in over 2500 fungal genomes in the JGI MycoCosm portal. In 2018, he … al (2021) Anaerobic gut fungi are an untapped reservoir of natural products. Proc Natl Acad Sci U S A. …
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JGI@25 RECAP: 2022 Annual Meeting features historical perspectives on JGI’s 25 years
As part of the JGI’s 25th anniversary celebration, the 2022 Annual Meeting featured speakers who shared a look back … Patrinos opened with this quote from Thomas Kuhn in his 25th Anniversary presentation. “Those driven by new tools and …
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Rex Malmstrom
Microscale Applications group. Before joining the JGI in 2010, he made the first ever measurements of in situ growth … active, membrane-bound organelles. Science  376,1453-1458 Nuccio et al 2022 . HT-SIP: a semi-automated stable … Genome-wide selective sweeps and gene-specific sweeps in natural bacterial populations. ISME Journal 10 (7), 1589 …
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New Vision, New Mission, New Plan: The JGI’s Next Five Years
New 5-year strategic plan outlines how the JGI will advance the … (DOE) Joint Genome Institute (JGI) has released its newest 5-Year Strategic Plan: Innovating Genomics to Serve the Changing Planet (download a copy at jointgeno.me/2024StrategicPlan .) This plan aligns the DOE Office of …
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Characterizing Communities: JGI Announces Latest CSP Portfolio
… proposals previously accepted through JGI’s calls. Nearly 200 Terabases of data are expected to be generated for the … Through the Tara Oceans Expeditions that took place between 2009 and 2013, the  Chaetoceros genus has been identified as the most …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… page of that book. Published online September 28, 2022, in Cell , a team led by researchers at Tel Aviv … Using this workflow, the team combed through more than 5,000 data sets of RNA sequences (metatranscriptomes) … work resulted from a three-way collaboration that began in 2019, recalled Uri Neri of Tel Aviv University, one of the …
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Matt Blow
Dr. Blow joined the JGI in 2009, and currently heads the User Support Analysis group. … Sanger Institute and Cambridge University University in 2005, where he studied RNA editing and cancer genetics. Dr. … Genomes from Single Bacterial Cells bioRxiv , 2024.01. 30.577819 2. Dicenzo et al. 2022. DNA Methylation in  Ensifer …
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Hiroshi Otani
Since joining the DOE Joint Genome Institute in 2016, Dr. Otani has been studying secondary metabolism in … H, Udwary DW, Doering DT, Mouncey NJ. Cytochromes P450 involved in bacterial RiPP biosyntheses. J Ind Microbiol … NJ. New keys to unlock the treasure trove of microbial natural products. Nat Rev Microbiol. 2021 Nov;19(11):683. …
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David Goodstein
… equipment manufacturer KLA-Tencor before joining the JGI in 2002. Initially focused on building tools to facilitate … structural mutation in the laboratory. The Plant Cell 35 (2), 644-672 A Sreedasyam et al., 2023. JGI Plant Gene … across the plant kingdom. Nucleic acids research 51 (16), 8383-8401. JT Lovell et al., 2022. GENESPACE tracks …
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
… the JGI DNA Synthesis Science Program, which started in 2012, and what they’ve discovered through their … Institute of Aquatic Science and Technology in September 2021. Robinson stressed that the DNA Synthesis Science …
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Learning to Look
… will have all of these features. As described July 22, 2019, in  Nature Microbiology , a team led by scientists at … more than 10,000 inovirus-like sequences compared to the 56 previously known inovirus genomes. “These genomes are so … approach detected inoviruses in 3,609 (6 percent) of the 56,868 microbial genomes and 2,249 of the 6,412 (35 percent) …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… these gaps of knowledge. In a study published November 11, 2022, in Cell Genomics , the team focused on Actinobacteria … new GEBA-Actino genome sequences were combined with nearly 5,000 publicly available ones and 1,100 metagenome-assembled …
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