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A Natural Mechanism Can Turbocharge Viral Evolution
The first step in the deadly dance between a virus and microbial cell is an embrace. For a virus with a “head-tail” morphology, this means using … of viruses that had in their genomes a surprising tool: a “diversity generating retroelement,” or DGR. The DGR could …
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Olpidium, The Key to the Origin of Terrestrial Fungi
Before 2006, Olpidium was one of the many obscure fungi of … non-flagellated terrestrial fungi suggested that there were multiple flagellum loss events during the diversification of … data . Taking the advantage of rapid development of binning methods, we were able to recover Olpidium sequences from the …
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MGM Workshop at Fisabio Summer School
June 24-28: Module 2/Microbial Genomics & Metagenomics Workshop The workshop is … will train participants in state-of-the-art analytical methods in this area, by means of theoretical lectures and seminars as well as practical hands-on sessions in bioinformatics and biostatistics. …
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Draft genome sequence of Halomonas lutea strain YIM 91125T (DSM 23508T) isolated from the alkaline Lake Ebinur in Northwest China
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JGI Early Career Researchers Featured in mSystems Special Issue
… sorting (FACS) to sort cells into several small pools before sequencing to recover rare microbes. The technique was … sequence reads to link mobile elements such as plasmids to microbial host cells. In a separate article, research … nature. In the last few years, mapping the planet’s viral diversity has advanced drastically, aided by genome assembly …
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Mindfully Moving JGI
JGI is in the process of shifting its operations from Walnut Creek … Walnut Creek, after countless generations of sequencing platforms (up to 120 sequencing machines at maximum) maintained … Walnut Creek and deciding on what was essential. There were multiple waste streams to consider, including unneeded …
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Metagenomics reveals niche partitioning within the phototrophic zone of a microbial mat
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Ray Turner Completes Last Tour of Lab Duty at JGI
For the last 15 years, Ray Turner has been one constant for the Joint Genome Institute. On July 1, 2020, that all changed. … person needs establish the culture of workforce safety and diversity and working together and making a welcoming and …
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JGI Scientists Pen Genome Watch Articles
Woyke and other JGI researchers made their debut writing for the Nature Reviews Microbiology column last year — and … with an email in 2018.  Tanja Woyke , who leads the  Microbial Program at the JGI, received a message from Andrea … so far selected the authors of these pieces to represent diversity in research area, gender, as well as stage of …
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Complete genome sequence of the halophilic bacterium Spirochaeta africana type strain (Z-7692T) from the alkaline Lake Magadi in the East African Rift
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Examples: Successful LOIs & Submissions
See below for examples of successful Letters of Intent to our … in a cosmopolitan and abundant soil bacterium: genetic microdiversity or core metabolic flexibility? … Microbial contributions to soil carbon storage during …
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Applying Viral Genomics Expertise to Understanding the Human Virome
JGI researchers lend expertise to develop tools and data hub for NIH program. While the microbes in, on and around Earth … in developing and maintaining the JGI’s  Integrated Microbial Genomics and Microbiomes (IMG/M) system. The … In a  2019 paper , the team applied computational methods and analyses developed for JGI-enabled research …
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