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From Textbook to Real World Applications
… When local students Maya Hanck of Carondelet High School and Tim Kostolansky of De La Salle High School expressed an interest in learning more about the principles of synthetic biology, Robert Evans and Jan-Fang Cheng in the …
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The Megadata of Lake Mendota - Part 1: Many, Many Mers
… Lake Mendota sits right next to the University of Wisconsin, Madison. And Trina McMahon's lab has been sampling the microbes of that lake for over 20 years, to understand how the …
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Enlarging Windows into Understanding Gene Functions
… in sequences affect traits. In a text file, the rows of letters A, T, C and G appearing over and over in a … a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab). And one of the … Unique Capability DAP-seq allows researchers to identify all the sites where transcription factors bind quickly …
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The Mobilome in the Mire
… researchers have known that many datasets miss a key part of microbial genomes: the mobile genetic elements, or MGEs, … in the future. Join Sarah Bagby (Case Western Reserve University) and Simon Roux (JGI) as they talk about their …
Learn more
Inaugural Critical Minerals & Materials Joint Research Portfolio Announced
… Setsuko Wakao, Meng Wang, and Allison Werner.   A total of 20 proposals were selected by the Joint Genome Institute … (TMF) for their collaborative user program. The portfolio of research proposals integrates genomics with nanoscale … The Joint Genome Institute and Molecular Foundry are DOE Office of Science user facilities. They provide researchers …
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Uncovering Novel Genomes from Earth’s Microbiomes
… Large-scale comparative analysis leads to identification of biosynthetic gene clusters for novel secondary … a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab), and the  DOE … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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Engagement Webinar: Accessing NEON’s Environmental Sample Archives, Applying JGI & EMSL Omics Tools
… National Ecological Observatory Network (NEON) is a network of field research sites designed to collect long-term open … includes access to the NEON Biorepository at Arizona State University, which archives and makes available for research over 100,000 samples and specimens of over 60 different types of NEON samples and specimens per …
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Team Science Reveals Important Protein in Poplar
… Brookhaven National Laboratory (BNL) led a team that  identified a protein , PtrbHLH011, within poplar involved in … Described as the “DOE Tree,” poplar is considered one of the  Flagship Plants for the U.S. Department of Energy … a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab). because of its …
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JGI Pitches 2022 Visiting Faculty Program Collaborations
… JGI and the Workforce Development & Education department of Lawrence Berkeley National Laboratory (Berkeley Lab) hosted a pitch … summer research collaborations through the U.S. Department of Energy (DOE)’s Visiting Faculty Program (VFP) . The VFP …
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2023 Progress Report
… for a sustainable bioeconomy. Mission  As a U.S. Department of Energy Office of Science user facility, we provide advanced genomic …
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SIPs with Standards
… SIP labwork and analysis can be very demanding.  The JGI offers SIP analysis to make these experiments accessible to … This episode, Rex Malmstrom (JGI), and Roli Wilhelm (Purdue University), share a few different ways they're working to … more reusable, and more insightful, for the future of studying microbial communities.   …
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Simon Roux
… the JGI in 2017 to lead viral genomics research as part of the Metagenome Program. His responsibilities include the development of novel computational tools to identify virus sequences, the design of new experimental … Neri et al., 2023. Expansion of the global RNA virome reveals diverse clades of …
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