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Ancient Algae Reveal Secrets of Plant Evolution
… helped plants conquer land over 600 million years ago. The Science By studying the genes of land plants’ closest algal relative,  … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … This work was funded by the US National Science Foundation (NSF) CAREER award (DBI-1652164, …
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An Automated Tool for Assessing Virus Data Quality
… assess virus sequence fragments and data quality. The Science Through advances in sequencing technologies and computational approaches, … uncultivated viruses. Following up on those guidelines, JGI researchers have now developed CheckV (pronounced … Energy Joint Genome Institute is supported by the Office of Science of the U.S. Department of Energy under contract no. …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… Understanding the shared genetic toolkit of ancestral and present-day plants The Science In a recent  Nature Genetics paper , researchers … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … Institute ( https://ror.org/04xm1d337 ), a DOE Office of Science User Facility, is supported by the Office of Science …
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Defining a Pan-Genome for Antarctic Archaea
… Analysis of haloarchaeal metagenomes broadens understanding of Antarctic biogeography. The Science Haloarchaea flourish in hypersaline environments, … applications. The work has been enabled through the JGI Community Science Program (CSP) . Cavicchioli and his …
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Data Discovery Tool Helps Identify Microbial Roles within Metagenomes
… Protein annotations provide insights into environmental tendencies The Science The  Metagenome Stability Diagram — a tool within … mSystems paper , a team at the DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … Institute ( https://ror.org/04xm1d337 ), a DOE Office of Science User Facility, is supported by the Office of Science …
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How Maize Makes An Antibiotic Cocktail
… Maize produces a family of compounds that protects it against infections — using surprisingly few enzymes. The Science Maize ( Zea mays ) produces a plethora of … as  Sorghum bicolor — a  candidate bioenergy feedstock and  JGI Flagship Plant — could produce at least 15 zealexins. …
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The Surprising Structure of a Shrub Willow Sex Chromosome
… the sex chromosomes of mammals is, for the first time, seen in a plant. The Science Sex in plants can be befuddling. Most species are … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … to M.O.). Support was also provided by the National Natural Science Foundation of China (31590821, 31561123001, …
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Finding the Fermenters
… Harnessing BER-funded data resources, researchers built an … and comprehensive database of fermentative prokaryotes. The Science Most organisms use oxygen to convert food into … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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CSP New Investigator Call
… The CSP New Investigator Call is for investigators and research initiatives new to the JGI. Projects must be independent of ongoing JGI proposals, and lead PIs cannot have been lead PI on any … about the general review process or get details on the internal synthetic biology review process .  …
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How to Target a Microbial Needle within a Community Haystack
… A workflow for capturing the genetic make-up of specific uncultivated microbes from complex environmental samples. The Science A team led by researchers at the Max Planck … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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DAS Tool for Genome Reconstruction from Metagenomes
… Developing and validating an integrated approach to genome recovery from metagenomes. The Science Through the JGI’s Emerging Technologies Opportunity Program (ETOP) , … Energy Joint Genome Institute is supported by the Office of Science of the U.S. Department of Energy under Contract No. …
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A Pinch of Salt Activates Silent Gene Clusters in Streptomyces
… This single environmental trigger highlights efficiency for users … omics methods to examine microbial chemical production. The Science Soil bacteria in the genus Streptomyces are nature's … of multiple omics data from various environments — that JGI users can leverage to create a more complete picture of …
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