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Large-scale comparative analysis leads to identification of biosynthetic gene clusters for novel secondary … Ivanova, senior author of the study and head of the JGI’s Microbiome Annotation Group. Many of these bacterial and … sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  …

University of Florida, working with Valérie de Crécy-Lagard on using comparative genomics to predict gene function in bacteria and leveraging molecular biology and reverse … Sabeeha Merchant at UCLA as a NIH Ruth L. Kirschstein National Research Service Award (NRSA) Individual Postdoctoral …

Prodcast,” a podcast about the science and scientists of secondary metabolism.  DAN: Hey there, and welcome to the first … My name is Dan Udwary. I – as well as my co-host, Alison Takemura, whose voice you’ll hear in a minute – we work … of Science User Facility located at Lawrence Berkeley National Laboratory. Being a User Facility means that scientists …

As SIP experiments shed more light on microbial communities than ever before — especially with … participation — is especially important in microbial ecosystems. These communities harbor tens of thousands of … (LLNL), the Microbes Persist: Systems Biology of the Soil Microbiome  Science Focus Area (SFA), is producing hundreds …

Populations of Antarctic lake microbial communities change with the … cycling that evolved separately from other similar systems, and offers new clues into a unique environment in the … for metagenomic sequencing. A study  recently published in  Microbiome shows that the way nutrients flow through the …

… is a Staff Scientist and leader of the Microscale Applications group. Before joining the JGI in 2010, he made the first … strategy for stable isotope probing metagenomics. mSystems 8:e01280-22. Volland et al. 2022.   A centimeter-long … in the hyphosphere of arbuscular mycorrhizal fungi. Microbiome 199 Needham, D.M. et al. 2019. A distinct lineage …

Registration and Agenda Coming Soon!  Hosted by the DOE Joint Genome Institute, the … Ivanova , Functional Annotation Lead Steven Ahrendt , Biosystems Data Science … Brian Hedlund , University of Nevada, …

… stable isotope probing helps ID novel interactions between bacteria and fungi The Science Researchers have … with results published in the  November 2022 issue of Microbiome . High-throughput stable isotope probing (SIP) … type of mycorrhizal fungi, live within a plant’s root system. They form mutually beneficial relationships with over …

In microbial mats, communities of microorganisms live among viruses that infect them. But what trends govern those virus-host interactions? Do generalist viruses run rampant, capable of infecting … relied on methods that eschew culturing, painting a more systematic picture through single-cell and metagenomic …

A two-day kick-off meeting held at Lawrence Berkeley National Laboratory (Berkeley Lab) marked the visit of an … of topics related to structural biology, single cell and systems biology, omics, and big data science, machine learning … are excited to continue our fruitful collaboration in the microbiome space that has resulted in many impactful papers …

… became Platform Lead where she manages metabolomics production for community sequencing projects and heads R&D efforts … rich metabolite profiles from diverse biological and environmental samples in support of user science.  Capabilities … diterpenoids impact the composition of the root-associated microbiome in maize (Zea mays). Scientific Reports. 2021. …