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… genomes to classify gene families. The Science As a proof of concept, researchers developed an algorithm that “taught” … genomes of Dothideomycetes, the largest class of fungi, by lifestyles. The machine “learned” to identify data … The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …

… through the plant portal  Phytozome . Now the portal offers a way for users to more easily access public data sets through a common set of metadata. For Steve Wilson, JGI’s Systems Engineering … data sets within groups, such as plants (via Phytozome) or fungi ( MycoCosm ). “We have made a concerted effort to …

… DAN: You’re listening to the US. .Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the science and scientists of secondary metabolism.  DAN: Hi again, and welcome to … metabolomics, and natural products in plants, fungi, and microorganisms. If you want to collaborate, let …

… DAN: Welcome back for episode 9 of Natural Prodcast. This week, Alison and I talk to Roger … University in British Columbia, Canada. This is the last of the podcasts we recorded in my hotel room at SIMB, or the … metabolomics, and natural products in plants, fungi, and microorganisms. If you want to collaborate, let …

… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and …       Francis Martin on the main impact of ectomycorrhizal fungi, excerpted from his talk at the 2015 JGI Annual …

… Analysis reveals cotton genome stability across global lineages . Come harvest time, the cotton fields look … growing on plants, with fluffy white bolls bursting out of the green pods in every direction. There are 100 million … genomes within themselves and to other plant genomes. “Globally, cotton is the premier natural fiber crop of the …

… A preview of how large-scale single cell genomics complements … studies. The Science Researchers demonstrated the value of conducting large-scale single cell genomics by collecting … within populations that is a precursor to strain-level diversification and microbial speciation. …

… For the first time, a team analyzes the transcriptomes of a lichen fungus and alga to understand their partnership … to the ascomycetes, one of the two main branches of fungi); another is a photosynthetic microbe, tucked in the … molecular mechanisms can help researchers better model global carbon and nitrogen cycling. Summary To shed light on …

… In honor of the JGI's 25th anniversary in 2022, we have revisited a … complete draft genome sequence. At the time, the vital global source of both protein and oil was also the largest … to sequence — roughly 1.25 billion Gb (gigabasepairs — most fungi are around 50 million Mb, or megabases, in size). So, …

… Adapting the graduate research experience amidst a global pandemic   …

… his doctoral research in synthetic biology and microfluidics at the University of California, San Diego. As the Sequencing Technology … wide range of JGI user science projects spanning bacteria, fungi, and plants. His team is also developing single-nuclei … BS in Biochemistry and Cell Biology, University of California, San Diego PhD in Molecular Biology, …

… 35,000 samples — from plants, algae, bacteria, archaea, fungi, viruses — to support scientists around the world. Most of those researchers send their samples in from afar, … with names — but not doors — and robots handle a bunch of benchwork. …