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Kjiersten Fagnan
… Fagnan began working with JGI in 2012 as a NERSC bioinformatics computing consultant, after completing a petascale postdoctoral fellowship at NERSC and LBNL’s Computational Research … flows, and evolved into scalable methods for scientific data analysis. In 2014 Dr. Fagnan became the JGI-NERSC …
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JGI Contributes Nine to 2022 Highly Cited Researchers List
… This year’s list features 6,900 researchers working in 21 fields.  … Congratulations to the  2022 Highly Cited Researchers from the JGI recognized for their “significant influence in … and archaeal genomes from diverse branches of the Tree of Life.  Its latest addition — made possible in part by …
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Experimental Evolution of Extreme Resistance to Ionizing Radiation in Escherichia coli after 50 Cycles of Selection.
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Evolution of copper arsenate resistance for enhanced enargite bioleaching using the extreme thermoacidophile Metallosphaera sedula
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Adaptation to Environmental Extremes Structures Functional Traits in Biological Soil Crust and Hypolithic Microbial Communities
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Calculating the Costs of Multiple Switchgrass Gene Copies
… Scientists have discovered that the candidate bioenergy feedstock switchgrass has adapted to expand its habitat range. … guest piece, postdoctoral researcher Joseph Napier from the Juenger lab and computational biologist Paul … More genome copies in switchgrass leads to increased climate flexibility …
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An Automated Tool for Assessing Virus Data Quality
… can help researchers assess virus sequence fragments and data quality. The Science Through advances in sequencing … and more virus sequences are being recovered and identified from environmental samples (metagenomes). However, the … have now developed CheckV (pronounced “Check-Vee”) to help researchers assess and improve the quality of …
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Crysten Blaby-Haas
… joined the JGI in 2022 as lead of the Biomolecular Materials Initiative, a partnership between JGI and the … She earned her PhD in Microbiology and Cell Science in 2011 from the University of Florida, working with Valérie de Crécy-Lagard on using comparative genomics to predict gene function in bacteria and leveraging …
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Microfluidic-based mini-metagenomics enables discovery of novel microbial lineages from complex environmental samples
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Antiquaquibacter oligotrophicus gen. nov., sp. nov., a novel oligotrophic bacterium from groundwater
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Boosting Small Molecule Production in Super “Soup”
… Do metabolic pathways from engineered yeasts still work in cell-free … environments? (Spoiler: Yes.) Think of cells as tiny factories: within their walls they have both the machinery to … Genome Institute, a DOE Office of Science User Facility  located at Lawrence Berkeley National Laboratory, is committed …
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Cataloging the Microbes that Manage the Health of River Systems
… Database provides details on river microbes in 90% of US … researchers describe a dataset of microbial genomes sampled from rivers covering 90% of the watersheds in the … United States. They also provided multiple access points to the information. The team harnessed a community-science …
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