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The Peach v2.0 release: high-resolution linkage mapping and deep resequencing improve chromosome-scale assembly and contiguity
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Population Level Analysis of Evolved Mutations Underlying Improvements in Plant Hemicellulose and Cellulose Fermentation by Clostridium phytofermentans
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David Goodstein
… focused on building tools to facilitate expert curation of human gene models in support of JGI’s contributions to … comparative genomic systems as the JGI’s eukaryote research efforts expanded to include basal metazoans and plants. Working with a talented team of scientists and software engineers, Dr. Goodstein …
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CalTeach
… majors interested in developing a deep understanding of STEM teaching & learning. Their coursework focuses on … local classrooms and tutoring centers. Cal Teach offers a minor in Science and Math Education, as well as a …
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Doubling Down on Known Protein Families
… online Oct. 11, 2023 in  Nature highlights the vast array of functional diversity of microbes through a novel approach … at protein function within them. The work was led by a team of scientists at the U.S. Department of Energy (DOE) … and obtain hints of their possible functions. Yet these efforts were limited to the realm of already-known protein …
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Partners
… our Plant Program, and is further leveraging the services of the Arizona Genomics Institute for DNA and RNA extractions to support plant and other efforts. The JGI works closely with DOE computational …
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JGI Plant Gene Atlas: an updateable transcriptome resource to improve functional gene descriptions across the plant kingdom
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Identifying the Microbial Cleanup Crew at a Superfund Site
… the microbial community involved in a bioremediation effort. The Science In 1999, the Environmental Protection … PCE (perchloroethylene) found its way into the groundwater of several communities in New Mexico via leakage from a … the project are available on the  JGI Genome Portal .) The team has also been able to discover additional microbes that …
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Cataloging the Microbes that Manage the Health of River Systems
Database provides details on river microbes in 90% of US continental watersheds. The Science In a recent Nature … provided multiple access points to the information. The team harnessed a community-science program to collect … and resources on such large-scale multi-omic data efforts, but also how data integration and sharing could …
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Eelgrass Proves to Be Much Younger Than We Thought
… less than previously believed.  The Science Eelgrass, one of the most abundant plants in the ocean, originated in … assumed, due to the wide and varied geographic footprint of the plant, that eelgrass began colonizing the oceans  … about how eelgrass evolved can help inform conservation efforts for at-risk populations. Summary Eelgrass is unique …
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Application of Long Sequence Reads To Improve Genomes for Clostridium thermocellum AD2, Clostridium thermocellum LQRI, and Pelosinus fermentans R7
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Scaling High‐Resolution Soil Organic Matter Composition to Improve Predictions of Potential Soil Respiration Across the Continental United States
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