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… of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab). They are: Ivan Baxter of the … environments. He’s been involved in several plant genome projects through the Community Science Program. As a UEC … She’s also participated in the 1000 Fungal Genomes Project and has an interest in cross-disciplinary …

… science and serve as impact multipliers . The JGI has a long-term partnership with the HudsonAlpha Institute for Biotechnology for our Plant Program, … Scientific Computing Center (NERSC) and data infrastructure projects—the DOE Systems Biology Knowledgebase (KBase) and …

… Large-scale comparative analysis leads to identification of biosynthetic gene clusters for novel secondary … of Bacteria and Archaea (GEBA) initiative. “This project has helped to define the current shape of the … of genomic DNA at DSMZ for GEBA-Actino and similar projects. …

… prokaryotes. The Science Most organisms use oxygen to convert food into energy. However, in environments with little or no oxygen, life had found other ways … than 400 cultured rumen prokaryotes from the  Hungate1000 project . They also used the tool to predict possible …

… Cole, Mo Kaze, Akshay Paropkari, Vicente Ramirez and Rhondene Wint had summer 2018 internships in Walnut Creek. The … by passionate scientists working on interdisciplinary projects. I feel inspired to pursue a career in STEM. … to know you and provide all resources to excel in your project.”     Vicente Ramirez, UC Merced JGI Mentor: Albert …

… reveals the microbial community involved in a bioremediation effort. The Science In 1999, the Environmental Protection Agency declared the North Railroad … to analyze the resulting metagenomic data. (Data from the project are available on the  JGI Genome Portal .) The team …

… On July 6, scientists from Lawrence Berkeley National Laboratory (Berkeley Lab) and other institutions shared … algorithm — a convolutional neural network, called  ResNet 34   — in order to vectorize protein sequences. Sevim … of Science User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in …

… Bacterial enzymes play second fiddle to those from fungi when it comes to breaking … of researchers have found that there is a striking division of labor between the two groups. Fungi are much more … sequences assembled as part of its 1000 Fungal Genomes Project . To map microbial activity, Baldrian’s team …

… private sector, as well as research expertise in secondary metabolites and synthetic biology. Dr. Mouncey has a long-standing interest in microbial genetics that started with his education and carried forward into his roles as a senior research … Nigel Mouncey is the Secondary Metabolites Program head as well as our JGI Director. …

… DNA for genome sequencing was no easy task. The traditional way of collecting them is through a method called Multiple Displacement Amplification, and most genomes that were acquired through it were usually only around 30% complete.  Described in  ISME Communications …

… Leveraging massive comparative genomics to decode millions of mystery genes and lay a future-ready foundation     … of scientists. Initiatives like our 1000 Fungal Genomes Project established crucial phylogenetic frameworks spanning … ecological niches from genomic features alone. In one major project analyzing over 1,000 yeast genomes, machine learning …

… Program was brimming with excitement and determination as they came onsite. From data carpentry to science … and their JGI mentors are listed below, along with their project focus areas: Undergraduate Interns Andrew Lin and … to work on fungal genomics and the fact that I got to do a project involving over 12,000 fungal genomes was just …