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Complete genome sequence of the gliding freshwater bacterium Fluviicola taffensis type strain (RW262T)
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Pinning Down a Piece of Photosynthesis
… an array of experiments at universities and national user facilities, researchers found that this protein detects … or DRI for short.  A kaleidoscope of structure-function data To study DRI experimentally, Blaby-Haas, Grosjean and … function inside the cell, Grosjean used the JGI-developed  guideRNA and Sequence Extraction Tool (gRNA-SeqRET) to …
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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Berkeley Lab. In addition to … of enzymes. It’s useful to differentiate these enzyme tools into two groups: core metabolism and specialized … screwdrivers in a toolkit. This way, these important tools are always around, regardless of malfunction or …
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Len Pennacchio
… the JGI’s primary point of contact for all High-Throughput Data Generation Platforms (Sequencing, Single Cell, DNA … Additional duties of this Deputy include interacting with users seeking to exploit new genomic technologies and … a vision for future technical JGI directions for DOE User science. … Complete Publications Genomic Technologies …
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Ben Bowen
… and chemistry for advanced analysis, modeling, and data integration. Dr. Bowen’s expertise in spectral … supporting the DOE’s Biological and Environmental Research user community in their bioenergy and environmental … Northen, T., & Bowen, B. (2015). Analysis of metabolomics datasets with high-performance computing and metabolite …
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JGI@25: The Human Genome Project, or the JGI’s Origin Story
… the human genome. They were interested in genes involved in repair of DNA damage, and those associated with … completing the human genome, the JGI became a national user facility. The staff and resources shifted to offering …
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2021 JGI Proposal Call Brings New Investigators into Community Science Program
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … call recommended including plans to analyze and distribute data through the  DOE Systems Knowledgebase (KBase) , a … thousand Actinobacteria strains and then use computational tools to analyze biosynthetic gene clusters and then develop …
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Trent Northen
… to provide advanced metabolomic methods available to JGI users.  Dr. Northen’s research is focused on using … Populus across genotypes and environments. 2024 Nature Sci Data. 11, 339. https://doi.org/10.1038/s41597-024-03069-7  … 4;118(18). https://doi.org/10.1073/pnas.2019855118 McGivern BB et al. Decrypting bacterial polyphenol metabolism in an …
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JGI announces second round of 2023 New Investigator awardees
Felipe Valdez-Nuñez  The JGI is eager to work and share our tools with a widening circle of researchers. That’s why …
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Natural Prodcast Episode 4: Nancy Keller
Aspergillus was pretty good, but, you know, just from a data standpoint, just figuring out introns and dealing with, … of Energy Joint Genome Institute, a DOE Office of Science User Facility located at Lawrence Berkeley National Lab. You … air, email us at [email protected] .    And because we’re a User Facility, if you’re interested in partnering with us, …
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Polar Phytoplankton Need Zinc to Cope with the Cold
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … his team then linked those species-level observations with data on microalgal communities across different ocean … from pole to pole, using metatranscriptome and metagenome data from the JGI. With multiple threads of evidence showing …
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Identifying the Microbial Cleanup Crew at a Superfund Site
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … , they were able to analyze the resulting metagenomic data. (Data from the project are available on the  JGI Genome …
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