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MGM Workshop at Fisabio Summer School 2025
… fields who are interested in learning and sharing concepts, tools and research results in genomics, metagenomics and the …
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Learning to Look
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, developed an algorithm that a computer could … a similar type of search in microbial and metagenomic databases. In this case, the machine “learned” to identify a … of phage-bacterial coevolution and are also useful tools in CRISPR-Cas applications, but we are limited in our …
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2022 Progress Report
Biology Knowledgebase (KBase), the National Microbiome Data Collaborative (NMDC), and Berkeley Lab Biosciences Area … (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility at Lawrence Berkeley National Laboratory … Lab), is to become the leading integrative genome science user facility enabling researchers to solve the world’s …
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Microbial Genomics & Metagenomics (MGM) Workshop
…   This highly hands-on workshop is designed to familiarize users with the Integrated Microbial Genomes & Microbiomes (IMG/M) data and workflows for computational analysis and interpretation of sequence data. IMG/M is a web-based platform that provides access to …
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MGM Workshop at Fisabio Summer School
… fields who are interested in learning and sharing concepts, tools and research results in genomics, metagenomics and the …
Learn more
Ancient Algae Reveal Secrets of Plant Evolution
… them to adapt to life on land. Learning that these genetic tools existed in close algal relatives  to terrestrial … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … (grant agreement no. 101001675). … Zygnema on PhycoCosm … Dataset …
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The Expanding Universe of Methane Metabolisms in Archaea
… the Integrated Microbial Genomes & Microbiomes (IMG/M) database maintained by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, for publicly available metagenome data … datasets from a variety of environments, as well as tools for analysis. “There is evidence that methanogenesis …
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Triggering Morel Fruiting
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility,  reported on just how morel fruiting is … every family of fungi. In the following guest piece, JGI user Dr. Tan details the results of the team’s work. Morels … . … Morel Mushrooms on MycoCosm Data Portal …
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Axel Visel
Institute in Hanover, Germany, where he developed novel tools for large-scale in situ gene expression analysis in …
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Micro-Scale Applications Group
… is eating what?” and “who is active? … The JGI provides users access to cutting-edge cell sorting, DNA …
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Emiley Eloe-Fadrosh
… research focuses on leveraging thousands of metagenomic datasets from host-associated and environmental samples to … She also leads the DOE’s multi-lab National Microbiome Data Collaborative (NMDC). … Emiley Eloe-Fadrosh is the … Wood-Charlson EM, et al. 2020. The National Microbiome Data Collaborative: enabling microbiome science. Rev. …
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Understanding Wildfire Recovery, Starting in Soil
… — mainly actinobacteria, as well as proteobacteria, bacteroidata, and patescibacteria. A major strength of this kind of … Institute (JGI). EMSL and the JGI are DOE Office of Science User Facilities located at Pacific Northwest National … … Leotiomycetes and Coniochaeata lignaria on MycoCosm Data portal … Datasets …
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