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Kjiersten Fagnan
Research Division.. As a postdoc, her research focused on stable and accurate computational methods for … Dr. Fagnan became the JGI-NERSC Engagement Lead with a focus on adapting JGI workloads to run on supercomputing … 2018 NERSC, CRD Petascale Postdoctoral Fellow … Education … About the JGI Chief Informatics Officer … Selected …
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Cultivating Symbiotic Antarctic Microbes
… to carbon cycling, and is interested in understanding the genomic basis and ecological consequences of microbe-microbe interactions. Using metagenomes recovered directly from environmental … researchers have been able to gain further insights about how microbes have adapted to thrive in polar …
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JGI Launches Latest Strategic Plan
… sequence to the public data repositories over its now 20-plus-year history. In 2019, the countdown has begun to the June dedication event of the Integrative Genomics Building—the new home of the JGI and KBase in the … prospective partners to generate awareness of and clarity about the JGI’s strategic directions,” said Mouncey. “In …
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Biotech Partners Summer Intern Co-Authors NAR Paper
Kaushal Sharma, one of five Antioch High School rising juniors … Database (GOLD) administered by the DOE JGI. T.B.K Reddy, Kaushal‘s mentor, described his student’s contributions as … tasks we assigned.”       Click here to watch a video about the Biotech Partner summer interns at the JGI. What …
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Computationally Classifying Fungal Lifestyles
… and feedstocks for biomass and biofuel production. Learning about the ecology and evolution of  Dothideomycetes could … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … Dothideomycetes species, and also provides more information about speciation events. … The work conducted by the U.S. …
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An Automated Tool for Assessing Virus Data Quality
CheckV can help researchers assess virus sequence fragments and data quality. The Science Through advances in sequencing technologies and computational approaches, more and more virus sequences are being recovered and identified from …
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Understanding Wildfire Recovery, Starting in Soil
A metagenomic look at the soil microbes present a year after a … forest floor. Within the soil, a microbiome of bacteria, viruses and fungi process carbon and nitrogen, paving the way … from a wildfire that burned at the Colorado-Wyoming border, about a year after the fire. They sampled soil across a …
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Access to Rock Star Scientists
Through the JGI-UC Merced Genomics Internship, graduate students Candace Cole, Mo … so nice and helpful.”     Mo Kaze, UC Merced JGI Mentor : Susannah Tringe, Microbial Systems Group “Everyone here is very kind and really open to talking about their work. It’s fun to be around people who are …
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Engagement Webinar: How to Successfully Apply for a CSP Proposal
CSP  New Investigator call for proposals.  Tips: Contact us with your questions ([email protected]) … your proposal idea with JGI staff to clarify key points about JGI’s capabilities, technical feasibility, and … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … their collaborations. One review article in the collection, Genomics-enabled analysis of specialized metabolism in … LanzaTech. “JGI has always been a leader in DNA sequencing technologies. The DNA synthesis program combines these …
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
… ultimate achievement. To get to this point requires rigorous research, written skill, above all else, determination. … Grigoriev at the JGI strongly influenced her perspective about what it means to be a scientist. “To see how team … to learning about how to navigate and analyze large genomic datasets during the internship, Wint also began …
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New Lineages of Life Group
Our research is focused on the discovery and characterization of novel bacterial, archaeal and eukaryotic microbes and viruses in environmental sequence data. We use multi-omics (metagenomics, metatranscriptomics, single cell genomics and …
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