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Extracting the Secrets of Secondary Metabolites
… combo helps further demystify biosynthetic gene clusters.  The Science Microbial secondary metabolites, those … (Clustered Regularly Interspaced Short Palindromic Repeats) is the leading tool for accurately editing genomes, its … and other industries — yet there’s still so much about them we don’t know.  Unlocking the power of secondary …
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Waiting to Respire
Genomes from uncultivated bacteria offers clues to ancestral bacteria’s energy … popularizer and communicator (and at one time, the spouse of Lynn Margulis). The information was then used to … Program head Tanja Woyke of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science …
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Identifying the Microbial Cleanup Crew at a Superfund Site
… reveals the microbial community involved in a bioremediation effort. The Science In 1999, the Environmental … Dehalococcoides mccartyi and  Dehalobacter restrictus,  that work together to break down PCE into the chemical … areas that require cleanup and long-term monitoring. The DOE has been similarly invested in environmental management, …
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Gut Fungi: Unexpected Source of Novel Chemicals
… complex compounds — an energetically expensive feat thought to be too costly for them. The Science Anaerobic … off early from aerobic fungi, which can breathe oxygen — just like we do. Oxygen is a rich source of energy, and … genomes were sequenced by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science …
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How to Target a Microbial Needle within a Community Haystack
… for capturing the genetic make-up of specific uncultivated microbes from complex environmental samples. The … targeted genomic approach would allow researchers to focus on specific microbes within metagenome samples and … traditional shotgun metagenomics approach to learning more about environmental samples starts with researchers first …
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Digging into Microbial Ecosystems Deep Underground
… “Microbes underpin so much of what we see on earth in terms of nutrient cycles and biogeochemical cycles…. Viruses play a pretty important role in the cycling of … Amundson at Colorado State University have many questions about the microbial communities deep underground, and before …
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University of California, Merced Internship Program
Originally conceived as a UC Merced graduate student summer research experience at the JGI, the Genomics Internship Program soon expanded to … Merced students have contributed to the research of numerous JGI scientists. Interns say their experiences allowed …
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You Can Move, But You Can’t Hide
Researchers at the JGI develop a tool to quickly and accurately identify mobile genetic elements like plasmids and viruses. The Science Mobile genetic elements (MGEs) are genetic … biogeochemical cycles around them. By understanding more about the genomics of MGEs and their evolution at the …
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Alabama A&M Interns Access An Abundance of Knowledge
… research training experience. Enabled by the DOE RENEW initiative, undergraduate student Ti’Yanna Watson and graduate … fellow interns and scientists alike. Want to learn more about their experience? Watch the short video below. Video … fall for my master’s in plant soil science and my career focus is plant breeding. Ti’Yanna Watson: My mentor is Dr. Yi …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
Team develops a computational pipeline to sift and characterize RNA virus sequences.  A zoo once offered a coloring book featuring … Information, and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science …
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Outreach Stories
Interested in reading more JGI intern and mentor success stories? Read more below. …
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Applying Viral Genomics Expertise to Understanding the Human Virome
JGI researchers lend expertise to develop tools and data hub for NIH program. While the microbes in, on and around Earth outnumber the stars in the Milky Way, viruses outnumber the microbes by at least another order of magnitude. For years, scientists at the DOE Joint Genome Institute, a DOE Office of Science user …
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