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A Genomic Perspective Across Earth’s Microbiomes Reveals That Genome Size in Archaea and Bacteria Is Linked to Ecosystem Type and Trophic Strategy
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Soil virus offers insight into maintaining microorganisms
… distinct from similar proteins found in archaea, fungi or bacteria. Certain similarities with bacterial counterparts suggest the viral versions of the chitosanases originated in bacteria before being modified into virus-specific versions … to JKJ and KSH. A portion of this work was performed on a project award ( …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
… DNA sequences that code for CRISPR systems, which help bacteria resist foreign genetic elements by incorporating … (Nachwuchs-gruppe “Dr. Alexander Probst”), and the NOVAC project of the German Science Foundation (grant number DFG … the Census of Deep Life Sequencing call 2018, phase 14 project “Development of novel archaeal viruses and the …
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Understanding Wildfire Recovery, Starting in Soil
… at the forest floor. Within the soil, a microbiome of bacteria, viruses and fungi process carbon and nitrogen, … track the forest recovery process.  Summary Most studies on post-wildfire soil microbiomes have focused on marker gene … DOE Office of Science National User Facilities in a single project. …
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Expanding Horizons with the 2025 JGI-UC Merced Internship Cohort
… Interns contributed to a number of projects, from refining lab protocols at the bench to … students, hosted by 18 JGI staff. One of the mentors, postdoc Yumary Vasquez, was herself a program alum from the … Liu Project:  Promoter Characterization of the Bacillota Bacterial Phylum Saray Maeda Mentors: Jonelle Basso, Heejung …
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H2-saturation of high affinity H2-oxidizing bacteria alters the ecological niche of soil microorganisms unevenly among taxonomic groups
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Synergistic interactions between anammox and dissimilatory nitrate reducing bacteria sustains reactor performance across variable nitrogen loading ratios
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JGI@25 RECAP: 2022 Annual Meeting features historical perspectives on JGI’s 25 years
… from its beginnings in the sequencing for the Human Genome Project out to the future of the institution. Their talks … inception as part of the Human Genome Project. He managed a small but important part of that program — looking at … challenges and addressing the problems early when they’re small, easier to deal with and before they grow into big …
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Model Fern Reveals Insight into DNA Thievery in Ferns
… duplications, and even more ancient gene transfers from bacteria have all armed the plant with an array of defense … the fern’s defense-related gene families were snatched from bacteria. The insertion of transposable elements — also … to Z.-H.C.). B.A.A. and D.W.S. acknowledge funding for this project from the Ambrose Monell Foundation. …
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Complete Genome Sequences for the Anaerobic, Extremely Thermophilic Plant Biomass-Degrading Bacteria Caldicellulosiruptor hydrothermalis, Caldicellulosiruptor kristjanssonii, Caldicellulosiruptor kronotskyensis, Caldicellulosiruptor owensensis, and
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Applying Viral Genomics Expertise to Understanding the Human Virome
… Laboratory, have collaborated with global researchers on projects related to understanding how the interactions … such as analytical tools and data repositories to two projects funded through the National Institutes of Health’s … prediction for metagenome-derived viruses of archaea and bacteria ( PLoS Biol , 2023). These tools have significantly …
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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
… our focus on all the kingdoms, including animals, plants, bacteria, archaea and fungi. We thought this kind of … across different species, each organism has a relatively small set of around 20 ATs. These ATs have maintained a small and relatively constant number across different …
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