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A Plant Root Atlas for Tracking Developmental Trajectories
… nearly 100,000 single root cells and combining the information with previously published datasets. The work was  … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … in wild type and cell identity mutants . Dev Cell. 2022 Feb 28. S1534-5807(22)00033-8.doi: …
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Access to Rock Star Scientists
Through the JGI-UC Merced Genomics Internship, graduate students Candace … have done the groundbreaking work you’ve been reading about for years! And you can ask them about it! And they’re super … and understandings in the field of genomics. This has reinforced my goal to pursue a career in STEM. I have not had …
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CalTeach
CalTeach is a program for undergraduate majors interested in developing a deep … as well as a unique opportunity to complete a California K-12 science or math teaching credential as an …
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Trent Northen
… large DOE-funded research programs using mass spectrometry for energy and environmental research, including through the … the ENIGMA SFA project. In 2015, he founded what is now the JGI Metabolomics Program to provide advanced metabolomic … Education, UC Berkeley Haas School of Business DOE Oppenheimer Science and Energy Leadership … Novak, V, et al. …
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What Happens Underground Influences Global Nutrient Cycles
DOE user facilities EMSL and JGI announce FY 2020 collaborative FICUS projects. Through the Facilities Integrating Collaborations for User Science (FICUS) program, two Department of Energy … of drought on plant metabolism and particularly, what happens in the rhizosphere where plants, microbes and soil …
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MycoCosm, the JGI’s Fungal Genome Portal for Comparative Genomic and Multiomics Data Analyses
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
A group led by JGI scientists have made strides in improving and applying a … addition to the synthetic biologist’s toolkit: a technique for  c hassis (or strain)-independent  r ecombinase- a … to conduct genome-wide screens and explore biosynthetic pathway. Thus far, the JGI has deployed CRAGE to successfully …
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Boosting Small Molecule Production in Super “Soup”
Do metabolic pathways from engineered yeasts still work in cell-free … to make products such as proteins, and the mechanisms for maintenance to keep processes running smoothly. As … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… plant species have adapted to their local environments; for example, crop and ornamental seeds sold for the upper Midwest are often very different than those bred for … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Accelerating Metagenomics Discoveries with Deep Learning
… participants in an online workshop to harness deep learning for metagenomic data.  Metagenomic data, or DNA sequencing … to “learn” features. State of the art algorithms can perform astonishing degrees of feature recognition: for … the US Department of Energy (DOE) Joint Genome Institute (JGI), presented on generating vector representations of …
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Decoding Yellowstone’s Microbial Mats
… are living, communally, in microbial mats. Along the way, they’ve encountered surprises, adopted new …
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Methane Makers in Yosemite’s Lakes
These lakes are isolated, but varied. They’re a great way to see how climate change affects freshwater ecosystems, …
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