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Learning to Look
Machine learning approach significantly expands inovirus diversity. To answer the question, “Where’s Waldo?” … machine “learned” to identify a certain type of bacterial viruses or phages called inoviruses, which are filamentous … viruses,” said the study’s lead author Simon Roux, a JGI research scientist in the  Environmental Genomics group . …
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JGI@25: Using Team Science to Build Communities Around Data
Martin of the French National Institute for Agricultural Research (INRAE) focused on in-depth exploration of … The Open Green Genomes Initiative is the product of a 2018 Community Science Program proposal from James …
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Ben Bowen
… supporting the DOE’s Biological and Environmental Research user community in their bioenergy and environmental … Mentored Career Development awardee 1998-2003: NSF Graduate research training fellowship in biomolecular and optical devices 1997: NSF Interdisciplinary research experience for undergraduates fellowship … Raad, …
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Dan Rokhsar
… a Professor of Genetics, Genomics and Development after his research interests shifted from condensed matter physics to … biology, genomics and evolutionary biology. Dr. Rokhsar’s research is focused on understanding the origin, evolution, … Research Center, Yorktown Heights, NY … Publications … 2018 Marthella Foskett Brown Chair, Computational Biology, …
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The genome portal of the Department of Energy Joint Genome Institute: 2014 updates
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JGI@25: Studying Sorghum’s Survival Skills
… genome, the JGI has also continued to collaborate on research to understand how sorghum fares so well in harsh … John Mullet (Texas A & M and Great Lakes Bioenergy Research Center) and his team set out to compare different … sorghum plants in drought conditions for three years (2016-2018) in the field in Parlier, California at the UC Kearney …
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2024 Progress Report
… seen above is home to the DOE Joint Genome Institute (JGI). Researchers from the DOE Systems Biology Knowledgebase … cell- and cell-free expression platforms.  … We closed our 2018 Strategic Plan at the end of September, 2023 with over … ways to harness biology. This new plan positions JGI at the forefront of environmental genomics and sets forth a …
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The Surprising Structure of a Shrub Willow Sex Chromosome
… (DOE). (Poplar is a Flagship Plant.) To engineer them, researchers need to select and breed cultivars for the next … understand how sex determination works in shrub willow, researchers investigated the structures of the sex … enough to have evolved multiple times independently. The researchers also found a gene likely responsible for sex …
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Expanding Virophage Diversity
Virophages are small viruses with double-stranded DNA genomes that co-infect … in capsid maturation. Recently reported in  Microbiome , researchers from the US Department of Energy (DOE) Joint … Paez-Espino  discussed an early version of the paper at the 2018 Viral EcoGenomics & Applications (VEGA) Symposium. The …
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Cultivating Symbiotic Antarctic Microbes
… are symbionts and not free-living organisms. The Science Researchers employed multiple microbiology and ‘omics … from environmental samples and cultivated microbes, researchers have been able to gain further insights about … offers a genetically-tractable model system that could help researchers better understand the factors controlling …
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You Can Move, But You Can’t Hide
Researchers at the JGI develop a tool to quickly and … identify mobile genetic elements like plasmids and viruses. The Science Mobile genetic elements (MGEs) are … from cell to cell. Two of the most common forms of MGEs are viruses and plasmids. They can be found in virtually all of …
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JGI at the AGU Fall Meeting
Town Hall on the role of user facilities in accelerating research and tips for submitting successful proposals: … State University (short talk): “Predators of the Deep: virus-host dynamics in the terrestrial subsurface” 2pm Convention Center, Poster Hall …
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