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Scaling Up Existing Skill Sets
… Over the course of the summer, the JGI-UC Merced Genomics Internship paired six UC Merced students with seven JGI researchers for bioinformatics internship opportunities in fields ranging from …
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Leo Baumgart
… Dr. Baumgart joined the DOE Joint Genome Institute in 2018, following his … at the University of California, San Diego. As the Sequencing Technology Implementation Lead, he directs a … to a wide range of JGI user science projects spanning bacteria, fungi, and plants. His team is also developing …
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Uncovering Novel Genomes from Earth’s Microbiomes
… Large-scale comparative analysis leads to identification of biosynthetic gene clusters for novel … metabolites for multiple applications. Despite advances in sequencing technologies and computational methods in the … and cleanup. The JGI provides integrated high-throughput sequencing and computational analysis that enable …
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Characterizing Communities: JGI Announces Latest CSP Portfolio
… Proposals aim to sequence and annotate genomes from Antarctica to Africa to … Science Program of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user … interested in better characterizing the role endosymbiotic bacteria play on mating habits of Mucoromycota fungi, and …
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New Vision, New Mission, New Plan: The JGI’s Next Five Years
… New 5-year strategic plan outlines how the JGI will advance the bioeconomy, leveraging partnerships to advance foundational science, creating … Data and connectivity theme. Standardizing and streamlining the JGI’s data systems and tools, as well as …
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User Programs
… For accepted proposals, sequencing, synthesis, metabolomics and analysis will be paid for … with DOE mission-relevant projects that call for expansive sequencing, synthetic biology, and metabolomics capabilities …   Learn more about our individual calls and other opportunities to work with the JGI …
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JGI on the 2021 Highly Cited Researchers List
… among those recognized by Clarivate Analytics for demonstrating “significant influence in their chosen field or fields through the … developments that will enable researchers to move from identification of microbial novelty to assigning metabolic …
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Refining the Process of Identifying Algae Biotechnology Candidates
… to summary above^ as well ] The Science The recipe for growing algae as a source of sustainable biofuels seems fairly … Researchers collaborating across multiple institutions have sequenced and analyzed the genome of an alga that thrives in … which genes expression patterns. The analysis led to the identification of several transcription factor regulating …
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iPHoP: A Matchmaker for Phages and their Hosts
…   To understand virus-host dynamics, computation helps fill in what cultivation can’t. The Science At first, viruses are … For bacteriophage viruses, these hosts are microbes like bacteria, not humans. With metagenomic sequencing, researchers have found more of these viruses …
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Identifying the Microbial Cleanup Crew at a Superfund Site
… Analysis reveals the microbial community involved in a bioremediation effort. The Science In 1999, … from a local dry-cleaner. Researchers  identified two bacteria,  Dehalococcoides mccartyi and  Dehalobacter … down PCE into the chemical compound ethene. Applying genome sequencing and analysis, the researchers identified other …
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The Busy World of Deep Sea Eruptions
… St. John, Gilberto Flores, and Peter Girguis about sampling these communities, and understanding how they’ve adapted to this extreme environment.   …
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From Berkeley to Binghamton: Tracking Strawberry Evolution
… In the summer of 2015, Adam Session was a postdoc working at … and the  oilseed crop false flax – genomes that have been sequenced by the JGI – and the common strawberry, which is … interesting,” Session said.  The Kmer Subgenome Identification method can be  accessed here so that, Session …
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